Detail information of Os04g0409200_circ_g.4


General Information
CircRNA Name Os04g0409200_circ_g.4
ID in PlantcircBase osa_circ_023753
Alias NA
Organism Oryza sativa
Position chr4: 20242065-20242336  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene Os04g0409200
Parent gene annotation Similar to H0321H01.10 protein. (Os04t0409200-00)
Parent gene strand -
Alternative splicing Os04g0409200_circ_g.1 Os04g0409200_circ_igg.1 Os04g0409200_circ_igg.2 Os04g0409200_circ_g.3
Support reads 29
Tissues shoot, seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0409200-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTCAAGTTTGTCTTCAGCCACAACCTTTATGCTTGCTTCTGCCACTGCTGGAATCTCTTCCTC
CTCCTCAAAAGGTTTTACTTTATTATCATCAGGTATcggtagtcaagatggttccgaaatcctt
ccagcattgggtcaatttggtatatcttctgcccatctcctggtggtgggataactcgtggttt
atcctcca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 272
Transcript exons: 20242065-20242336
CGGTAGTCAAGATGGTTCCGAAATCCTTCCAGCATTGGGTCAATTTGGTATATCTTCTGCCCAT
CTCCTGGTGGTGGGATAACTCGTGGTTTATCCTCCACAGTTGGTTCATCAGCATCTTTGATCAC
ACCCTCAGTCACATTTTCCTCAATGTCTTGAATCACTTCTGAAGATTCAAGTTTGTCTTCAGCC
ACAACCTTTATGCTTGCTTCTGCCACTGCTGGAATCTCTTCCTCCTCCTCAAAAGGTTTTACTT
TATTATCATCAGGTAT

Genomic sequence CGGTAGTCAAGATGGTTCCGAAATCCTTCCAGCATTGGGTCAATTTGGTATATCTTCTGCCCAT
CTCCTGGTGGTGGGATAACTCGTGGTTTATCCTCCACAGTTGGTTCATCAGCATCTTTGATCAC
ACCCTCAGTCACATTTTCCTCAATGTCTTGAATCACTTCTGAAGATTCAAGTTTGTCTTCAGCC
ACAACCTTTATGCTTGCTTCTGCCACTGCTGGAATCTCTTCCTCCTCCTCAAAAGGTTTTACTT
TATTATCATCAGGTAT
Conservation Information
Conserved circRNAs osi_circ_014334
PMCS 0.259857077
Functional Information
Coding potential Y
Potential coding position 20242267-20242143(+)
20242184-20242331(-)
Potential amino acid sequence MLASATAGISSSSSKGFTLLSSGIGSQDGSEILPALGQFGISSAHLLVVG*(+)
MLMNQLWRINHELSHHQEMGRRYTKLTQCWKDFGTILTTDT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017