Detail information of BGIOSGA015140_circ_g.7


General Information
CircRNA Name BGIOSGA015140_circ_g.7
ID in PlantcircBase osi_circ_000496
Alias NA
Organism Oryza sativa ssp. indica
Position chr4: 18026718-18027983  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method DCC
Parent gene BGIOSGA015140
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015140_circ_g.1 BGIOSGA015140_circ_g.2 BGIOSGA015140_circ_g.3 BGIOSGA015140_circ_g.4 BGIOSGA015140_circ_g.5 BGIOSGA015140_circ_g.6 BGIOSGA015140_circ_g.8 BGIOSGA015140_circ_g.9 BGIOSGA015140_circ_g.10 BGIOSGA015140_circ_g.11 BGIOSGA015140_circ_g.12
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   TA-GT
Number of exons covered BGIOSGA015140-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGTAAATAGCCAATCAGAAAACTTACCTTTACACGTGAGCCATGAGGAATAGCAGGGGATCCA
TCAGCATTGTTAGGCAGGGAAATCTCCCAAACACCAacagcattgtacccaagctttttaattc
ttggtagcacctcatccctaaaattagcatatgtgtttatcttcggttcctgtacaacagacaa
taccgagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACAGCATTGTACCCAAGCTTTTTAATTCTTGGTAGCACCTCATCCCTAAAATTAGCATATGTGT
TTATCTTCGGTTCCTGTACAACAGACAATACCGAGTAATTATATTATGCATTATTGGGTACTCA
CACTACAGAACACAAACTTCACAGCTTGTTAGTACAAATCATCTAGGTAAGACAATATGGCATT
TCTTGCCTCCTAAATGCAAAATCTTCAACTGGTAACACAGCCACATTATTTAACAGGCCATTAC
AATTGTTAATCATAATAGATATGTTCTGGCAAACAATGTTTAGCTTTACTTTCAAATGCAACAA
AAATCATACTTCCTCCGTTTCACAATATAAGACTTTCTAGCATTGTCCACATTCATATAGATGT
TGATGAATCTAGACACATATACATCTATATGAATGTGGGCAATGCTAGAAAGTCTTACATTGTG
AAATGGAGGGAGTACAACAAAAAAAGGAAGATCTAATGAGAACAAAGTTTCACATATGTCAGTC
TGAAAACATTTTAAAATCTGTGTAGTTTATTACATGGAAAAAACGTGTCTGCTAGATATTAAAT
TGGAGAAGGGAAGTACTCTCAGATATGTTGTTAAACCTGCTACATAAATAGAAAGAACTAGATT
GCATTCTACAAAGCGAAAAAGGTTTCAAGACAAAAAAGAAAAGTCAAAATATTAATAACTTATT
GGCATACCGGGCTACTCATTCCAATATGTGATTCATATATCCGCAGCGAATTTGGTCGTTTAGG
TTGAGGATGTTGGAATACATATTTTTCCTGCAGTTGCGTATAAACAACATTAGGAGATGGAAAA
TAAAGGTTAAAATGGAATATCCTGATCAACAAAGAAAAAAAAGTAGTATTACACAGTTCTATAA
GGTTTTAGTGACACGAGCATAGATTTTTTTAAAAAAAATGCAATGGAAAAATATTTCGTTTAAA
GACTGTAAGGTAGAAACATACTTCTTCAGGTGGATCATAATATATACCGTTGTACGGTATTTCA
CCTGGAGCCTGCACAGCAAACTTAATCCAGGCAGGAATTGAATCCTTTACGCCAGATGGTGTAT
CCATCCGAATCTGGAAATTAAGAAGGTGAAAGAAGATCTCTCAGTAAGCTCATTTTGAAAATGA
TTAAACCCTCAACTAAGTAAATAGCCAATCAGAAAACTTACCTTTACACGTGAGCCATGAGGAA
TAGCAGGGGATCCATCAGCATTGTTAGGCAGGGAAATCTCCCAAACACCA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019