Detail information of BGIOSGA015140_circ_g.6


General Information
CircRNA Name BGIOSGA015140_circ_g.6
ID in PlantcircBase osi_circ_005449
Alias 4:18026673|18029898
Organism Oryza sativa ssp. indica
Position chr4: 18026673-18029898  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA015140
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015140_circ_g.1 BGIOSGA015140_circ_g.2 BGIOSGA015140_circ_g.3 BGIOSGA015140_circ_g.4 BGIOSGA015140_circ_g.5 BGIOSGA015140_circ_g.7 BGIOSGA015140_circ_g.8 BGIOSGA015140_circ_g.9 BGIOSGA015140_circ_g.10 BGIOSGA015140_circ_g.11 BGIOSGA015140_circ_g.12
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA015140-TA:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAGTTTCCACGTCTGGTTCCGCAGAGGACAGCAAGTCGTCGCTCCCACCGCCAGGCACCAGCA
CCTTCCCAGGAGCACCCGCGCAGCTCACAACGCCACccaaagcttgcgtaataagagtgctcct
ggattgccattatctgtacagcattgtacccaagctttttaattcttggtagcacctcatccct
aaaattag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAAAGCTTGCGTAATAAGAGTGCTCCTGGATTGCCATTATCTGTACAGCATTGTACCCAAGCT
TTTTAATTCTTGGTAGCACCTCATCCCTAAAATTAGCATATGTGTTTATCTTCGGTTCCTGTAC
AACAGACAATACCGAGTAATTATATTATGCATTATTGGGTACTCACACTACAGAACACAAACTT
CACAGCTTGTTAGTACAAATCATCTAGGTAAGACAATATGGCATTTCTTGCCTCCTAAATGCAA
AATCTTCAACTGGTAACACAGCCACATTATTTAACAGGCCATTACAATTGTTAATCATAATAGA
TATGTTCTGGCAAACAATGTTTAGCTTTACTTTCAAATGCAACAAAAATCATACTTCCTCCGTT
TCACAATATAAGACTTTCTAGCATTGTCCACATTCATATAGATGTTGATGAATCTAGACACATA
TACATCTATATGAATGTGGGCAATGCTAGAAAGTCTTACATTGTGAAATGGAGGGAGTACAACA
AAAAAAGGAAGATCTAATGAGAACAAAGTTTCACATATGTCAGTCTGAAAACATTTTAAAATCT
GTGTAGTTTATTACATGGAAAAAACGTGTCTGCTAGATATTAAATTGGAGAAGGGAAGTACTCT
CAGATATGTTGTTAAACCTGCTACATAAATAGAAAGAACTAGATTGCATTCTACAAAGCGAAAA
AGGTTTCAAGACAAAAAAGAAAAGTCAAAATATTAATAACTTATTGGCATACCGGGCTACTCAT
TCCAATATGTGATTCATATATCCGCAGCGAATTTGGTCGTTTAGGTTGAGGATGTTGGAATACA
TATTTTTCCTGCAGTTGCGTATAAACAACATTAGGAGATGGAAAATAAAGGTTAAAATGGAATA
TCCTGATCAACAAAGAAAAAAAAGTAGTATTACACAGTTCTATAAGGTTTTAGTGACACGAGCA
TAGATTTTTTTAAAAAAAATGCAATGGAAAAATATTTCGTTTAAAGACTGTAAGGTAGAAACAT
ACTTCTTCAGGTGGATCATAATATATACCGTTGTACGGTATTTCACCTGGAGCCTGCACAGCAA
ACTTAATCCAGGCAGGAATTGAATCCTTTACGCCAGATGGTGTATCCATCCGAATCTGGAAATT
AAGAAGGTGAAAGAAGATCTCTCAGTAAGCTCATTTTGAAAATGATTAAACCCTCAACTAAGTA
AATAGCCAATCAGAAAACTTACCTTTACACGTGAGCCATGAGGAATAGCAGGGGATCCATCAGC
ATTGTTAGGCAGGGAAATCTCCCAAACACCATACTCATTCTGAAAGTGATCATGCCATATATCA
ACACTAATAAGAGAAAAAACGTTGCTGGCACATGTAAATAGGCTCGTATGCTGCGAAATACACC
CTTCTCATGTCATATAATAAACCAGTGTGGATGGAAGTGTACAAAATTCAAGGCAATGTTTGGA
AAATGGGTTTGGGATATGATTTCCCACCCCCAAAGGGTAAGTTTTGATCTTAGCCATCCATTCA
TTTCACCCATTTCATCCTATCCCTCCATTCATTTCCATTTCCCAATCCCACCTCTCCTAACCCA
TTTTCCAAACACACCCCAAAAGGCTATATTAACCATTAGGATGCAAAATTGCATGCATGTGTTT
ACTGTTTACCCTAAACATGAATTCTGCTATTTTGGACTCAAAGAAGATGATAGTTAGTAAAGTA
AGGAACAGTGCTCTGTTTTCACTGACTTTGAGACAATATAGAGTAGCAGCATTTTAGAATGACA
CACGTGAGGTTCAACTTTAAGGAATATAAACAGAAATAATGAACCCAGATAATTGAAAATATAT
TAATGATACAATACAAAGATGGAAAATAAAAAGGTTGAAGACGTACTCTGGTCATAGTATCTGC
ATTTGGGTTCCAATTGTTGAAGTCACCTACTAATGCTGCAGACTGCAATAGGATGAAAATGTCA
TTTTTAATTCTTAATGTGATGACTGTTTGAAAAGAAGTTCATCAATATATCATTTGTGCTACTG
GTATAATTCCAGTACACTGGATAGGGAGTAGTGACCACTGCCAAATCACGTACCTGTGCTCCAG
GTGCCCATTCTCGGTAGGTAATGCCTTCAGCGCTGGAAAGGACGGAATAATGATATTGAGTTTG
ATCATTTGATATCCAAGTAGAATATTGTAGGAATTTCTGTAGTAATGCGACTTTAATTTTACCT
GCGGGTGAATCCAAGCTTTTCGTAACCACGAGAAAATGCATCCAAGCCACCTTCATGTTGGTCA
ATAGCTGCACGCATTCTCTTGTATTCACTGTATCTGTTCATACCACCACGCATACCAAAAAAGA
TATACTGAAGTTAACAGAGTAGGTTTCCCAACAAAAGCGCCAGATATCAGAAATTAATTTGCTG
AGTTGACAGAGAAGTGAGGGGATTAAACTATGCAGACTACTTGCCACATCCTTTTTGGTATCTC
TAGTGATCAGTGCCAATGATTTGTATTGCATTTGTGAGATATCACCTCTATTTTCAAATATTAT
ACCAACCTTAATCAAAATGAAAAAAAGTAAATAACTAACCGGTAGTCAAGATGGTTCCGAAATC
CTTCCAGCATTGGGTCAATTTGGTATATCTTCTGCCCATCTCCTGGTGGTGGGATAACTCGTGG
TTTATCCTCCACAGTTGGTTCATCAGCATCTTTGATCACACCCTCAGTCACATTTTCCTCAATG
TCTTGAATCACTTCTGAAGATTCAAGTTTGTCTTCAGCCACAACCTTTATGCTTGCTTCTGCCA
CTGATGGAATCTCTTCCTCCTCCTCAAAAGGTTTTACTTTATTATCATCAGGTATCTACACAGA
ACATAGATGGATAGACTCTGCATGAGACACCCAAAAAGAAAAAAAGGTACATTCTTTTGTGGCA
AAGTTGCTAGTTGGAAGACCCAACTTGGTTTTCAGTAGCCCAACAGCCAGCACAAGGTCACAAT
GCACAAAACACATGAAACCTGGCATTGCCACTACATCATTTCATCACACATTTGGTCAGTGAAT
GACAACAGCTCGAATTTTATTCCCGGCATTACCTGAGATTCTTCAGGTTGCTCTTGAGTTTCCA
CGTCTGGTTCCGCAGAGGACAGCAAGTCGTCGCTCCCACCGCCAGGCACCAGCACCTTCCCAGG
AGCACCCGCGCAGCTCACAACGCCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 18029308-18029789(-)
18029493-18026684(+)
Potential amino acid sequence MLEGFRNHLDYRYSEYKRMRAAIDQHEGGLDAFSRGYEKLGFTRSAEGITYREWAPGAQSAALV
GDFNNWNPNADTMTRNEYGVWEISLPNNADGSPAIPHGSRVKIRMDTPSGVKDSIPAWIKFAVQ
APGEIPYNGIYYDPPEEEKYVFQHPQPKRPNSLRIYESHIGMSSPEPKINTYANFRDEVLPRIK
KLGYNAVQIMAIQEHSYYASFGWRCELRGCSWEGAGAWRWERRLAVLCGTRRGNSRAT*(-)
MESLPPPQKVLLYYHQVSEILQVALEFPRLVPQRTASRRSHRQAPAPSQEHPRSSQRHPKLA*(
+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021