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circRNA ID
AT1G02080_circ_g.33
Alias
ath_circ_000204, Ath_circ_FC0138
Organism
Arabidpsis thaliana
Position
chr1: 384908-386043  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
CIRCexplorer
Parent gene
Parent gene annotation
Transcription regulator
Parent gene strand
+
Splice junction sequence  
GAAGACAAAGTTACTTCTATCGTCCAGCGAGGCTAGTTCAGCTGGAACCCGTTACAGTGTACCA
TTGATCAACTCGCTTGTGCTATATACTGGAATGCAGgttctcacagcttttgccaacgccttcc
acgcattgcagcctcttaagattcctgctttcaggttaggacacaaacctatttctcaccgtgc
ttctatta
Support reads
1
Tissues
root
Exon boundary  
Yes-Yes
Splicing signals  
GT-AG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
GTTCTCACAGCTTTTGCCAACGCCTTCCACGCATTGCAGCCTCTTAAGATTCCTGCTTTCAGGT
TAGGACACAAACCTATTTCTCACCGTGCTTCTATTAAAACTTAAAAATTTGAATCTCTCAGGAA
ATTTGAGGGCAGTCAAATACCTATGTTGTCAAACATTTCATGTTGTTGACATATGTATCTTCTT
TTCTTTGATCTGTGATCCGTGTTTTATACATTTTTTTTCTTCTCCACTGAGGTTTTTATAAATT
TTTCCAGTTTTGCATGGCTAGAACTTGTCAGCCACAGAAGCTTCATGCCCAAACTACTTACAGT
AAATGGCCAGAAGGGTTGGCCATATGTTCAGCGCCTGCTGGTGGACTTGCTTCAGTTTCTTGAG
CCATTTTTAAGAAATGCTGAACTCGGAGGACCGGTTTGTGCCTTTTTCTCTTCTGTAATTGTTT
TGCATTGGACACTAAAGGATATAGTCGATGGTAACTTAAAGTGGTCTCTTTTTTGGTGTGTTTA
TTAATTGCGTAGGTTCATTTCCTATACAAAGGGACATTGAGAGTATTACTGGTTCTGCTTCATG
ATTTCCCAGAGTTCCTATGTGATTATCATTTTACTTTCTGTGATGTGATTCCTTCAAGTTGCAT
ACAAATGCGGAATATTATCCTCAGTTCTTTTCCACGGAACATGAGGCTTCCTGATCCTTCTACC
CCAAATTTAAAGGTACGAGATGATAGTGGAGATTCCAGCATGTTCAACATATTTTAAAGAAAAT
ATATTCCTTGTAGGCTGAATTATCGTGTTCATTGCAGATTGATTTGTTACCTGAGATAGTAGAA
GCTCCCTGTATCCTTTCTGAGGTTGATGCTGCGCTAAAGGCAAAGCAAATGAAGAATGACGTGG
ATGAGTATCTTACGGTAATGGGAACACCTGATTCTTCAATTTACTTATATTCACTTTGGTATTC
TTGAGATTATATCAAGAGATACTCATATAATTTTTCTGCAGTCGAGGCAGCAAAATTCAACTTT
CCTAAGTGAGTTGAAGACAAAGTTACTTCTATCGTCCAGCGAGGCTAGTTCAGCTGGAACCCGT
TACAGTGTACCATTGATCAACTCGCTTGTGCTATATACTGGAATGCAG
Number of exons covered
AT1G02080.3:5
AT1G02080.1:5
AT1G02080.2:5
Conserved circRNAs
NA
Coding potential
Y
Potential coding position
385208-386040(+)
Potential amino acid sequence
MPKLLTVNGQKGWPYVQRLLVDLLQFLEPFLRNAELGGPVHFLYKGTLRVLLVLLHDFPEFLCD
YHFTFCDVIPSSCIQMRNIILSSFPRNMRLPDPSTPNLKIDLLPEIVEAPCILSEVDAALKAKQ
MKNDVDEYLTSRQQNSTFLSELKTKLLLSSSEASSAGTRYSVPLINSLVLYTGMQVLTAFANAF
HALQPLKIPAFSFAWLELVSHRSFMPKLLTVNGQKGWPYVQRLLVDLLQFLEPFLRNAELGGPV
HFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPSSCIQMRNIILSSFPRNMRLPDPSTPNLKI
DLLPEIVEAPCILSEVDAALKAKQMKNDVDEYLTSRQQNSTFLSELKTKLLLSSSEASSAGTRY
SVPLINSLVLYTGMQVLTAFANAFHALQPLKIPAFSFAWLELVSHRSFMPKLLTVNGQKGWPYV
QRLLVDLLQFLEPFLRNAELGGPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPSSCIQM
RNIILSSFPRNMRLPDPSTPNLKIDLLPEIVEAPCILSEVDAALKAKQMKNDVDEYLTSRQQNS
TFLSELKTKLLLSSSEASSAGTRYSVPLINSLVLYTGMQVLTAFANAFHALQPLKIPAFSFAWL
ELVSHRSFMPKLLTVNGQKGWPYVQRLLVDLLQFLEPFLRNAELGGPVHFLYKGTLRVLLVLLH
DFPEFLCDYHFTFCDVIPSSCIQMRNIILSSFPRNMRLPDPSTPNLKIDLLPEIVEAPCILSEV
DAALKAKQMKNDVDEYLTSRQQNSTFLSELKTKLLLSSSEASSAGTRYSVPLINSLVLYTGMQ(
+)
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Chu et al., 2017;Chen et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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