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circRNA ID
AT1G02080_circ_g.27
Alias
ath_circ_000198, At_ciR207, Ath_circ_FC0001, Ath_circ_FC4916
Organism
Arabidpsis thaliana
Position
chr1: 382803-383130  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
CIRCexplorer, CIRI, KNIFE, MapSplice, PcircRNA_finder, circRNA_finder, find_circ, CIRI-full
Parent gene
Parent gene annotation
Transcription regulator
Parent gene strand
+
Splice junction sequence  
GACCGCAACTGACTTTGCTATTTCTCTACTCCAATCCTTGGTCACTGAGGAGTCGAGTGTCATT
TCAGAGCTCCACAGTCTTGTTGATGCGCTGGCAAAGgtgatttattcagaggaggatcggaagc
tcaacaaagatattactattggtcttatccagcgtgagttgcttagcctagcggagtacaatgt
ccacatgg
Support reads
24/6/3
Tissues
leaf/root, leaf, aerial, seed, whole_plant/seedlings
Exon boundary  
Yes-Yes
Splicing signals  
GT-AG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
GTGATTTATTCAGAGGAGGATCGGAAGCTCAACAAAGATATTACTATTGGTCTTATCCAGCGTG
AGTTGCTTAGCCTAGCGGAGTACAATGTCCACATGGCGAAGCATCTTGATGGAGGGAGAAACAA
GACCGCAACTGACTTTGCTATTTCTCTACTCCAATCCTTGGTCACTGAGGAGTCGAGTGTCATT
TCAGAGCTCCACAGTCTTGTTGATGCGCTGGCAAAGGTGATTTATTCAGAGGAGGATCGGAAGC
TCAACAAAGATATTACTATTGGTCTTATCCAGCGTGAGTTGCTTAGCCTAGCGGAGTACAATGT
CCACATGGCGAAGCATCTTGATGGAGGGAGAAACAGTATGCTGAATTGCTTAACCTTTGTTGAT
GTCCTTGTGTGGTAACATTCTTTTTTTGTTTTGGCTAGTGAACTTGTTTTAACAAGTTGTTTGT
TACGCAGAGACCGCAACTGACTTTGCTATTTCTCTACTCCAATCCTTGGTCACTGAGGAGTCGA
GTGTCATTTCAGAGCTCCACAGTCTTGTTGATGCGCTGGCAAAGGTGATTTATTCAGAGGAGGA
TCGGAAGCTCAACAAAGATATTACTATTGGTCTTATCCAGCGTGAGTTGCTTAGCCTAGCGGAG
TACAATGTCCACATGGCGAAGCATCTTGATGGAGGGAGAAACAGTATGCTGAATTGCTTAACCT
TTGTTGATGTCCTTGTGTGGTAACATTCTTTTTTTGTTTTGGCTAGTGAACTTGTTTTAACAAG
TTGTTTGTTACGCAGAGACCGCAACTGACTTTGCTATTTCTCTACTCCAATCCTTGGTCACTGA
GGAGTCGAGTGTCATTTCAGAGCTCCACAGTCTTGTTGATGCGCTGGCAAAGGTGATTTATTCA
GAGGAGGATCGGAAGCTCAACAAAGATATTACTATTGGTCTTATCCAGCGTGAGTTGCTTAGCC
TAGCGGAGTACAATGTCCACATGGCGAAGCATCTTGATGGAGGGAGAAACAGTATGCTGAATTG
CTTAACCTTTGTTGATGTCCTTGTGTGGTAACATTCTTTTTTTGTTTTGGCTAGTGAACTTGTT
TTAACAAGTTGTTTGTTACGCAGAGACCGCAACTGACTTTGCTATTTCTCTACTCCAATCCTTG
GTCACTGAGGAGTCGAGTGTCATTTCAGAGCTCCACAGTCTTGTTGATGCGCTGGCAAAGGTGA
TTTATTCAGAGGAGGATCGGAAGCTCAACAAAGATATTACTATTGGTCTTATCCAGCGTGAGTT
GCTTAGCCTAGCGGAGTACAATGTCCACATGGCGAAGCATCTTGATGGAGGGAGAAACAAGACC
GCAACTGACTTTGCTATTTCTCTACTCCAATCCTTGGTCACTGAGGAGTCGAGTGTCATTTCAG
AGCTCCACAGTCTTGTTGATGCGCTGGCAAAGGTGATTTATTCAGAGGAGGATCGGAAGCTCAA
CAAAGATATTACTATTGGTCTTATCCAGCGTGAGTTGCTTAGCCTAGCGGAGTACAATGTCCAC
ATGGCGAAGCATCTTGATGGAGGGAGAAACAGTATGCTGAATTGCTTAACCTTTGTTGATGTCC
TTGTGTGGTAACATTCTTTTTTTGTTTTGGCTAGTGAACTTGTTTTAACAAGTTGTTTGTTACG
CAGAGACCGCAACTGACTTTGCTATTTCTCTACTCCAATCCTTGGTCACTGAGGAGTCGAGTGT
CATTTCAGAGCTCCACAGTCTTGTTGATGCGCTGGCAAAGGTGATTTATTCAGAGGAGGATCGG
AAGCTCAACAAAGATATTACTATTGGTCTTATCCAGCGTGAGTTGCTTAGCCTAGCGGAGTACA
ATGTCCACATGGCGAAGCATCTTGATGGAGGGAGAAACAAGACCGCAACTGACTTTGCTATTTC
TCTACTCCAATCCTTGGTCACTGAGGAGTCGAGTGTCATTTCAGAGCTCCACAGTCTTGTTGAT
GCGCTGGCAAAGGTGATTTATTCAGAGGAGGATCGGAAGCTCAACAAAGATATTACTATTGGTC
TTATCCAGCGTGAGTTGCTTAGCCTAGCGGAGTACAATGTCCACATGGCGAAGCATCTTGATGG
AGGGAGAAACAAGACCGCAACTGACTTTGCTATTTCTCTACTCCAATCCTTGGTCACTGAGGAG
TCGAGTGTCATTTCAGAGCTCCACAGTCTTGTTGATGCGCTGGCAAAGGTGATTTATTCAGAGG
AGGATCGGAAGCTCAACAAAGATATTACTATTGGTCTTATCCAGCGTGAGTTGCTTAGCCTAGC
GGAGTACAATGTCCACATGGCGAAGCATCTTGATGGAGGGAGAAACAAGACCGCAACTGACTTT
GCTATTTCTCTACTCCAATCCTTGGTCACTGAGGAGTCGAGTGTCATTTCAGAGCTCCACAGTC
TTGTTGATGCGCTGGCAAAGGTGATTTATTCAGAGGAGGATCGGAAGCTCAACAAAGATATTAC
TATTGGTCTTATCCAGCGTGAGTTGCTTAGCCTAGCGGAGTACAATGTCCACATGGCGAAGCAT
CTTGATGGAGGGAGAAACAAGACCGCAACTGACTTTGCTATTTCTCTACTCCAATCCTTGGTCA
CTGAGGAGTCGAGTGTCATTTCAGAGCTCCACAGTCTTGTTGATGCGCTGGCAAAG
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
GTGATTTATTCAGAGGAGGATCGGAAGCTCAACAAAGATATTACTATTGGTCTTATCCAGCGTG
AGTTGCTTAGCCTAGCGGAGTACAATGTCCACATGGCGAAGCATCTTGATGGAGGGAGAAACAG
TATGCTGAATTGCTTAACCTTTGTTGATGTCCTTGTGTGGTAACATTCTTTTTTTGTTTTGGCT
AGTGAACTTGTTTTAACAAGTTGTTTGTTACGCAGAGACCGCAACTGACTTTGCTATTTCTCTA
CTCCAATCCTTGGTCACTGAGGAGTCGAGTGTCATTTCAGAGCTCCACAGTCTTGTTGATGCGC
TGGCAAAG
Number of exons covered
AT1G02080.3:2
AT1G02080.2:2
AT1G02080.1:2
Conserved circRNAs
NA
Coding potential
Y
Potential coding position
382899-383127(+)
Potential amino acid sequence
MAKHLDGGRNKTATDFAISLLQSLVTEESSVISELHSLVDALAKVIYSEEDRKLNKDITIGLIQ
RELLSLAEYNVHMAKHLDGGRNKTATDFAISLLQSLVTEESSVISELHSLVDALAKVIYSEEDR
KLNKDITIGLIQRELLSLAEYNVHMAKHLDGGRNKTATDFAISLLQSLVTEESSVISELHSLVD
ALAKVIYSEEDRKLNKDITIGLIQRELLSLAEYNVHMAKHLDGGRNKTATDFAISLLQSLVTEE
SSVISELHSLVDALAK(+)
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Ye et al., 2015;Chu et al., 2017;Pan et al., 2017;Chen et al., 2017;Liu et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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