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circRNA ID
AT1G02080_circ_g.24
Alias
ath_circ_000195, At_ciR1589
Organism
Arabidpsis thaliana
Position
chr1: 382373-383130  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, circRNA_finder, find_circ, CIRI-full
Parent gene
Parent gene annotation
Transcription regulator
Parent gene strand
+
Splice junction sequence  
GACCGCAACTGACTTTGCTATTTCTCTACTCCAATCCTTGGTCACTGAGGAGTCGAGTGTCATT
TCAGAGCTCCACAGTCTTGTTGATGCGCTGGCAAAGgccgtaatttctgaagttcctgaaatca
tcctcagatgtataagcagagatgaagccgcttttgctgtcgctcaaaaagctttcaaggctct
ttacgaga
Support reads
7/29/2
Tissues
leaf/root, seed, whole_plant/seedlings
Exon boundary  
Yes-Yes
Splicing signals  
GT-AG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
GCCGTAATTTCTGAAGTTCCTGAAATCATCCTCAGATGTATAAGCAGAGATGAAGCCGCTTTTG
CTGTCGCTCAAAAAGCTTTCAAGGCTCTTTACGAGAATGCATCAAGTAACCTTCACGTCAGTGC
TAACCTAGCAATACTTGTTGCTATCCGTGATGTTTGCAAGCGTGTTGTTAAAGAGCTCACTAGT
TGGGTGATTTATTCAGAGGAGGATCGGAAGCTCAACAAAGATATTACTATTGGTCTTATCCAGC
GTGAGTTGCTTAGCCTAGCGGAGTACAATGTCCACATGGCGAAGCATCTTGATGGAGGGAGAAA
CAAGACCGCAACTGACTTTGCTATTTCTCTACTCCAATCCTTGGTCACTGAGGAGTCGAGTGTC
ATTTCAGAGCTCCACAGTCTTGTTGATGCGCTGGCAAAGGCCGTAATTTCTGAAGTTCCTGAAA
TCATCCTCAGATGTATAAGCAGAGATGAAGCCGCTTTTGCTGTCGCTCAAAAAGCTTTCAAGGC
TCTTTACGAGAATGCATCAAGTAACCTTCACGTCAGTGCTAACCTAGCAATACTTGTTGCTATC
CGTGATGTTTGCAAGCGTGTTGTTAAAGAGCTCACTAGTTGGAGACCGCAACTGACTTTGCTAT
TTCTCTACTCCAATCCTTGGTCACTGAGGAGTCGAGTGTCATTTCAGAGCTCCACAGTCTTGTT
GATGCGCTGGCAAAG
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
GCCGTAATTTCTGAAGTTCCTGAAATCATCCTCAGATGTATAAGCAGAGATGAAGCCGCTTTTG
CTGTCGCTCAAAAAGCTTTCAAGGCTCTTTACGAGAATGCATCAAGTAACCTTCACGTCAGTGC
TAACCTAGCAATACTTGTTGCTATCCGTGATGTTTGCAAGCGTGTTGTTAAAGAGCTCACTAGT
TGGGTATGTTTACAACCTTTTCAAGATTTCACTTCGCTGATGTGCTTTGTTCAGTTACTTCTCC
ATTAATTTGTCACTATTTCTGTCAGAACACATAGGATAACACATATCATATAAGTGCTAGGTCG
AGTCTGTTTCCTGTAGTTGGAGCCTATCCTCAACTGGTTATAGATACTAGATTTGTTTCTTTGG
TATTTTTAGTTATAATTAATTATCTTTCTTCAAACTTTTGACACAGGTGATTTATTCAGAGGAG
GATCGGAAGCTCAACAAAGATATTACTATTGGTCTTATCCAGCGTGAGTTGCTTAGCCTAGCGG
AGTACAATGTCCACATGGCGAAGCATCTTGATGGAGGGAGAAACAGTATGCTGAATTGCTTAAC
CTTTGTTGATGTCCTTGTGTGGTAACATTCTTTTTTTGTTTTGGCTAGTGAACTTGTTTTAACA
AGTTGTTTGTTACGCAGAGACCGCAACTGACTTTGCTATTTCTCTACTCCAATCCTTGGTCACT
GAGGAGTCGAGTGTCATTTCAGAGCTCCACAGTCTTGTTGATGCGCTGGCAAAG
Number of exons covered
AT1G02080.1:3
AT1G02080.2:3
AT1G02080.3:3
Conserved circRNAs
NA
Coding potential
Y
Potential coding position
382899-383127(+)
Potential amino acid sequence
MAKHLDGGRNKTATDFAISLLQSLVTEESSVISELHSLVDALAKAVISEVPEIILRCISRDEAA
FAVAQKAFKALYENASSNLHVSANLAILVAIRDVCKRVVKELTSWVIYSEEDRKLNKDITIGLI
QRELLSLAEYNVHMAKHLDGGRNKTATDFAISLLQSLVTEESSVISELHSLVDALAKAVISEVP
EIILRCISRDEAAFAVAQKAFKALYENASSNLHVSANLAILVAIRDVCKRVVKELTSWVIYSEE
DRKLNKDITIGLIQRELLSLAEYNVHMAKHLDGGRNKTATDFAISLLQSLVTEESSVISELHSL
VDALAKAVISEVPEIILRCISRDEAAFAVAQKAFKALYENASSNLHVSANLAILVAIRDVCKRV
VKELTSWVIYSEEDRKLNKDITIGLIQRELLSLAEYNVHMAKHLDGGRNKTATDFAISLLQSLV
TEESSVISELHSLVDALAK(+)
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Ye et al., 2015;Chu et al., 2017;Pan et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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