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circRNA ID
AT1G02080_circ_g.34
Alias
ath_circ_000205
Organism
Arabidpsis thaliana
Position
chr1: 385713-386333  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
CIRCexplorer
Parent gene
Parent gene annotation
Transcription regulator
Parent gene strand
+
Splice junction sequence  
TCTGTTCCTTAATGCAATCGCCAATCAGCTTCGATACCCCAACAACCACACTCATTACTTTTCT
TTCATCATGCTCTATCTATTCTTCGAATCTGATCAGattgatttgttacctgagatagtagaag
ctccctgtatcctttctgaggttgatgctgcgctaaaggcaaagcaaatgaagaatgacgtgga
tgagtatc
Support reads
7
Tissues
seedlings
Exon boundary  
Yes-Yes
Splicing signals  
GT-AG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
ATTGATTTGTTACCTGAGATAGTAGAAGCTCCCTGTATCCTTTCTGAGGTTGATGCTGCGCTAA
AGGCAAAGCAAATGAAGAATGACGTGGATGAGTATCTTACGGTAATGGGAACACCTGATTCTTC
AATTTACTTATATTCACTTTGGTATTCTTGAGATTATATCAAGAGATACTCATATAATTTTTCT
GCAGTCGAGGCAGCAAAATTCAACTTTCCTAAGTGAGTTGAAGACAAAGTTACTTCTATCGTCC
AGCGAGGCTAGTTCAGCTGGAACCCGTTACAGTGTACCATTGATCAACTCGCTTGTGCTATATA
CTGGAATGCAGGTATGGGTCTAATTTCTATACAGCCTTTTCTTTTGATTTCTAGTTTATTATAT
ATATATATATGCAAATAACCGACATTGCGATAACAGGCTATTCAGCAGCTTCAGGCCGGTGAGA
CACAGGCTCAAAATGTTGTGGCCTTGCAGATGTTCAAGTATTTAAGTATGGAACTTGATACGGA
AGGGCGGTATCTGTTCCTTAATGCAATCGCCAATCAGCTTCGATACCCCAACAACCACACTCAT
TACTTTTCTTTCATCATGCTCTATCTATTCTTCGAATCTGATCAG
Number of exons covered
AT1G02080.1:3
AT1G02080.2:3
AT1G02080.3:3
Conserved circRNAs
NA
Coding potential
Y
Potential coding position
385788-386330(+)
Potential amino acid sequence
MKNDVDEYLTSRQQNSTFLSELKTKLLLSSSEASSAGTRYSVPLINSLVLYTGMQAIQQLQAGE
TQAQNVVALQMFKYLSMELDTEGRYLFLNAIANQLRYPNNHTHYFSFIMLYLFFESDQIDLLPE
IVEAPCILSEVDAALKAKQMKNDVDEYLTSRQQNSTFLSELKTKLLLSSSEASSAGTRYSVPLI
NSLVLYTGMQAIQQLQAGETQAQNVVALQMFKYLSMELDTEGRYLFLNAIANQLRYPNNHTHYF
SFIMLYLFFESDQIDLLPEIVEAPCILSEVDAALKAKQMKNDVDEYLTSRQQNSTFLSELKTKL
LLSSSEASSAGTRYSVPLINSLVLYTGMQAIQQLQAGETQAQNVVALQMFKYLSMELDTEGRYL
FLNAIANQLRYPNNHTHYFSFIMLYLFFESDQIDLLPEIVEAPCILSEVDAALKAKQMKNDVDE
YLTSRQQNSTFLSELKTKLLLSSSEASSAGTRYSVPLINSLVLYTGMQAIQQLQAGETQAQNVV
ALQMFKYLSMELDTEGRYLFLNAIANQLRYPNNHTHYFSFIMLYLFFESDQ(+)
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Pan et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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