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circRNA ID
AT1G02080_circ_g.31
Alias
ath_circ_000202, Ath_circ_FC0137
Organism
Arabidpsis thaliana
Position
chr1: 383608-384969  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
PcircRNA_finder
Parent gene
Parent gene annotation
Transcription regulator
Parent gene strand
+
Splice junction sequence  
TATTAATTGTTATCACTTTAATTAATCTTTTGTTGCAGGTTCTCACAGCTTTTGCCAACGCCTT
CCACGCATTGCAGCCTCTTAAGATTCCTGCTTTCAGgttgcgtgcaacaccactaacacagaag
agagtaccagcttggattatgtggaatcagatcctgcgggtttccagaatcgggtaattgtctg
catgttat
Support reads
15
Tissues
inflorescences
Exon boundary  
Yes-Yes
Splicing signals  
GT-AG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
GTTGCGTGCAACACCACTAACACAGAAGAGAGTACCAGCTTGGATTATGTGGAATCAGATCCTG
CGGGTTTCCAGAATCGGGTAATTGTCTGCATGTTATTAGCGTTTATGAACTTCTATATTGATTT
AGAGCTCTACCTTTTCTTTTTTAAAAGTTGATTGGGAATTGCATATATCTAAATTTTTCACTTG
CAAAAGAGTAAATCAAAAGCTAAAATGTTTGTATCAGCACAATGAATTTGCAAGCTACAAAAAG
GATTTCAAAACAAACGTTTCTATGAAGCTATTTTCGTTCAGTATGCATGTTTTTTTCCTTATTT
TTGTCTTGTAGATGGATTTTAAATTTTCACTTTAATTCGATGTATTTAGATACATGTGTTTGTA
GTTTGTTATCTCTTCAGTTTTATGTTTGAACATACATCTCTCGTACTTCTTGTTTATATCTTGT
TTTTGTCTTCCTCTGTATGGTTTGGCAGGTGTCCACGCTATTTAAAAACTGGTATCAAATCTGC
GAACTTCCTGGTGCAAATGAAACCGCATGTTCACAATATGTCCTGCATTTGCACCAGACTGGAT
TACTTAAGGGAGATGATACAACAGAGAGTTTTTTCCGAATTCTTCTGGTGATTTTACCTTTTAA
GAATGTTTTAGCATCAGCACTTTCAAATCTTGAGAGGCATCATTATTGATTTTGGCTTTCCTTT
CTGTAGGAACTTTCTGTTGCTCATTGTATATCTTCTGAAGATATTAATTCCGGTGCTGTGCAAT
CTCCTCAGCAACCTCAGAGTCCATCATTCCTTATCATTGATATGTATGCAAAGCTTGTTTTTTC
AATATTGAAGGTAGAGTGCTCATTTTTTTTTTTGCATTCTTCGTGGATAATTATACCCAAAATA
CATTGCCGGCTAAGCTTTTTTTGTTTTGTTTGTTTCTTATGACAATCTGTTCAGTATTTCCCTG
AGCAGGAGTCTAGCAGTAGGTTATTTCTTCTTTCAGAGGTAAGGGGACACATACTCTTATTGGA
AATAAATCTAACTTCTACTATAATGGATGGAAAAGGTGAGTGGTATTGATTACCTGTTTCAGAT
CATGGCTGACACAGTGAGATTTATTCAAAAGGACGCAGAAGATAAAAAGACATCACTCAATTCT
AAACCATATTTCCGATTGTTCATCAACTGGCTACTGGACTTGTGTTCCCTGGATCCTGGGACGG
ATGGTGCAAACTTTCAGGTGCATTTTGTTGTCCTTGAAGTAGCTGCTATTAATTGTTATCACTT
TAATTAATCTTTTGTTGCAGGTTCTCACAGCTTTTGCCAACGCCTTCCACGCATTGCAGCCTCT
TAAGATTCCTGCTTTCAG
Number of exons covered
AT1G02080.3:6
AT1G02080.2:6
AT1G02080.1:6
Conserved circRNAs
NA
Coding potential
N
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Chu et al., 2017;Chen et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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