Detail information of Os01g0300200_circ_g.5


General Information
CircRNA Name Os01g0300200_circ_g.5
ID in PlantcircBase osa_circ_001451
Alias NA
Organism Oryza sativa
Position chr1: 11001048-11001336  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0300200
Parent gene annotation Similar to ATP-citrate lyase subunit B. (Os01t0300200-01);Simila
r to ATP-citrate lyase subunit B. (Os01t0300200-02);Similar to A
CLB-1 (ATP-citrate lyase B-1). (Os01t0300200-03)
Parent gene strand -
Alternative splicing Os01g0300200_circ_g.4 Os01g0300200_circ_g.6 Os01g0300200_circ_g.7 Os01g0300200_circ_g.8 Os01g0300200_circ_g.9 Os01g0300200_circ_g.10 Os01g0300200_circ_g.11 Os01g0300200_circ_g.12 Os01g0300200_circ_g.13 Os01g0300200_circ_g.14
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CC-GT
Number of exons covered Os01t0300200-02:2
Os01t0300200-03:2
Os01t0300200-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATAATGTGTGTGGGAGCTCGGACCTTCCCACTCTTAATTGCGGTTTTAAGATCCTCTGGAATA
GGAGGTGGTGTAATCTCAGTAACAGGAGAGATCTTTcaccaactccataaccctgttcaataat
tgtagacatggggacaccagcatagcagggttcctcgcctgtatcacaaaaatgcacctatatt
acttcctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CACCAACTCCATAACCCTGTTCAATAATTGTAGACATGGGGACACCAGCATAGCAGGGTTCCTC
GCCTGTATCACAAAAATGCACCTATATTACTTCCTGGTAGGGATAGTATGACAAAGATTGAACA
TGGAGAATATGTGGAAAAACACATTGCCACCAATCTAACCTCTGTCATCCGAGATAGTGGAGAT
AATGTGTGTGGGAGCTCGGACCTTCCCACTCTTAATTGCGGTTTTAAGATCCTCTGGAATAGGA
GGTGGTGTAATCTCAGTAACAGGAGAGATCTTT
Conservation Information
Conserved circRNAs NA
PMCS 0.295548529
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017