Detail information of Os01g0300200_circ_g.12


General Information
CircRNA Name Os01g0300200_circ_g.12
ID in PlantcircBase osa_circ_001458
Alias NA
Organism Oryza sativa
Position chr1: 11003173-11004239  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os01g0300200
Parent gene annotation Similar to ATP-citrate lyase subunit B. (Os01t0300200-01);Simila
r to ATP-citrate lyase subunit B. (Os01t0300200-02);Similar to A
CLB-1 (ATP-citrate lyase B-1). (Os01t0300200-03)
Parent gene strand -
Alternative splicing Os01g0300200_circ_g.4 Os01g0300200_circ_g.5 Os01g0300200_circ_g.6 Os01g0300200_circ_g.7 Os01g0300200_circ_g.8 Os01g0300200_circ_g.9 Os01g0300200_circ_g.10 Os01g0300200_circ_g.11 Os01g0300200_circ_g.13 Os01g0300200_circ_g.14
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0300200-03:2
Os01t0300200-02:5
Os01t0300200-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAAATCAAGCATCCGTTGGATCGGAAGTTGCTTATAATTATAGAATAACGCTTGGGTGGTTTT
GGAGAAAATTTGACCTGTCGCCATGGTTTAGTTCGCcgatttagaaacaaagccaacagatcca
ggcctgtaaagcttgcattgaataatgttgtcaatggttccagcagtatcaccaatcttgaaag
caccagct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGATTTAGAAACAAAGCCAACAGATCCAGGCCTGTAAAGCTTGCATTGAATAATGTTGTCAATG
GTTCCAGCAGTATCACCAATCTTGAAAGCACCAGCTTGGATTCCTCCAACTGTTGCTGGTCCAA
TGATTACCTAGAAACAACAACAGTTACTTGGTAAAATAAACGAGAAACATGCAGGCCGCCGTCA
GCGTTAGTGCCTGGCAGGCAATAAAATAGCATGCCAACACCAATATCTGGAATGGACAAAATAC
CACCATTGTGTTTACATATTATTTTATAAGGAGACAGTAATTTATTCATATTTAATTTGTAAGA
CTTTTACGGCGAGAATCTGGTGCAAATATCATGTTTGCAAAGCAGTTAAATTCATGCAAGGCAT
AATCCCTACCTTGTTGTTGGCACGTGCATAACTAATAAGTTGTTTTGTATCTGATTCAGGAACA
CCCTCTGCTATGATGGCTACAACTCTGATTGTTGGCTGCTTCAAAGCTGACATTGAAGAAGCGG
CAGCACTGCAGATTAAGCAAATAAAAAACACTTGTAGTTGTTCTAGGATCATGTGGTTTTTGCT
CAAAGGAATATCAGAATGCTAACTAACCTCCGAAAGGATGCAAAGTTGATAAATACATCAGCAG
TTGGGTGTGCATTGCAGGCAGCTTCAATTCTGCAAAAATATAAATGAGTATAAATAAATTGTTT
ACAAACGAACAATCTGTTAATGTACACATGAACTTATATGAGGAGCAGAGCACTCACGTAGGAT
GAACTGGAATGGCAATTTCTTCTTGTCCAAAGAAAAGTTTCTGAAACCCATCAGAACCAGGATT
GATTATTCCAGCAACAGAAGGTGTTTCTCTCCCTATAAAGCAGAGTAAGGTCAGCAAGCAAGAA
GCAAAAAAGAAACAACGTGCAACATTTCTTAGCCAATATTGATAAGACAGACAGCGTACCACAT
AGGAAGTCAAAATCAAGCATCCGTTGGATCGGAAGTTGCTTATAATTATAGAATAACGCTTGGG
TGGTTTTGGAGAAAATTTGACCTGTCGCCATGGTTTAGTTCGC
Conservation Information
Conserved circRNAs NA
PMCS 0.271672673
Functional Information
Coding potential Y
Potential coding position 11004229-11004233(-)
Potential amino acid sequence MATGQIFSKTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSDGFQKLFFGQEEIAIP
VHPTIEAACNAHPTADVFINFASFRSAAASSMSALKQPTIRVVAIIAEGVPESDTKQLISYARA
NNKVIIGPATVGGIQAGAFKIGDTAGTIDNIIQCKLYRPGSVGFVSKSAN*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017