Detail information of Os01g0300200_circ_g.10


General Information
CircRNA Name Os01g0300200_circ_g.10
ID in PlantcircBase osa_circ_001456
Alias Os_ciR5065
Organism Oryza sativa
Position chr1: 11002862-11003279  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os01g0300200
Parent gene annotation Similar to ATP-citrate lyase subunit B. (Os01t0300200-01);Simila
r to ATP-citrate lyase subunit B. (Os01t0300200-02);Similar to A
CLB-1 (ATP-citrate lyase B-1). (Os01t0300200-03)
Parent gene strand -
Alternative splicing Os01g0300200_circ_g.4 Os01g0300200_circ_g.5 Os01g0300200_circ_g.6 Os01g0300200_circ_g.7 Os01g0300200_circ_g.8 Os01g0300200_circ_g.9 Os01g0300200_circ_g.11 Os01g0300200_circ_g.12 Os01g0300200_circ_g.13 Os01g0300200_circ_g.14
Support reads 3
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os01t0300200-03:2
Os01t0300200-01:2
Os01t0300200-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAACAAAGCCAACAGATCCAGGCCTGTAAAGCTTGCATTGAATAATGTTGTCAATGGTTCCAG
CAGTATCACCAATCTTGAAAGCACCAGCTTGGATTCcttcataaataccatctgtcactctggc
aatggtgttgtacatctcatttgacatgccaccctgttaatgtaatgcaagttcagtttgtcat
tggggtta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCATAAATACCATCTGTCACTCTGGCAATGGTGTTGTACATCTCATTTGACATGCCACCCTG
TTAATGTAATGCAAGTTCAGTTTGTCATTGGGGTTACATATGAGCATTACAATGTACGTTAAGA
GCTAAGATGTGAAGTTGCATGTGTACAGATTAAAAGGTCAGATATTTAACAGATCAAAAGTTGG
TAGTGCTACAAATGTTCTTTTTTAAAAATAGAATATTGCCTTTTTATGGATCAGAAATAGTACG
GAAGGTAAATTTCTTTTGTACAAACAACTTTAACAAAAATCAAATAAATGCATACCGATTTAGA
AACAAAGCCAACAGATCCAGGCCTGTAAAGCTTGCATTGAATAATGTTGTCAATGGTTCCAGCA
GTATCACCAATCTTGAAAGCACCAGCTTGGATTC
Conservation Information
Conserved circRNAs NA
PMCS 0.256579805
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015