Detail information of Os01g0300200_circ_g.13


General Information
CircRNA Name Os01g0300200_circ_g.13
ID in PlantcircBase osa_circ_001459
Alias NA
Organism Oryza sativa
Position chr1: 11003329-11003565  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os01g0300200
Parent gene annotation Similar to ATP-citrate lyase subunit B. (Os01t0300200-01);Simila
r to ATP-citrate lyase subunit B. (Os01t0300200-02);Similar to A
CLB-1 (ATP-citrate lyase B-1). (Os01t0300200-03)
Parent gene strand -
Alternative splicing Os01g0300200_circ_g.4 Os01g0300200_circ_g.5 Os01g0300200_circ_g.6 Os01g0300200_circ_g.7 Os01g0300200_circ_g.8 Os01g0300200_circ_g.9 Os01g0300200_circ_g.10 Os01g0300200_circ_g.11 Os01g0300200_circ_g.12 Os01g0300200_circ_g.14
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-CT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATTTATTCATATTTAATTTGTAAGACTTTTACGGCGAGAATCTGGTGCAAATATCATGTTTG
CAAAGCAGTTAAATTCATGCAAGGCATAATCCCTACtggtaaaataaacgagaaacatgcaggc
cgccgtcagcgttagtgcctggcaggcaataaaatagcatgccaacaccaatatctggaatgga
caaaatac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGGTAAAATAAACGAGAAACATGCAGGCCGCCGTCAGCGTTAGTGCCTGGCAGGCAATAAAATA
GCATGCCAACACCAATATCTGGAATGGACAAAATACCACCATTGTGTTTACATATTATTTTATA
AGGAGACAGTAATTTATTCATATTTAATTTGTAAGACTTTTACGGCGAGAATCTGGTGCAAATA
TCATGTTTGCAAAGCAGTTAAATTCATGCAAGGCATAATCCCTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.149437131
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017