Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0300200_circ_g.9 |
ID in PlantcircBase | osa_circ_001455 |
Alias | NA |
Organism | Oryza sativa |
Position | chr1: 11002694-11004239 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os01g0300200 |
Parent gene annotation |
Similar to ATP-citrate lyase subunit B. (Os01t0300200-01);Simila r to ATP-citrate lyase subunit B. (Os01t0300200-02);Similar to A CLB-1 (ATP-citrate lyase B-1). (Os01t0300200-03) |
Parent gene strand | - |
Alternative splicing | Os01g0300200_circ_g.4 Os01g0300200_circ_g.5 Os01g0300200_circ_g.6 Os01g0300200_circ_g.7 Os01g0300200_circ_g.8 Os01g0300200_circ_g.10 Os01g0300200_circ_g.11 Os01g0300200_circ_g.12 Os01g0300200_circ_g.13 Os01g0300200_circ_g.14 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os01t0300200-03:4 Os01t0300200-01:7 Os01t0300200-02:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.214451127 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
11004229-11004233(-) 11002878-11004009(-) |
Potential amino acid sequence |
MATGQIFSKTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSDGFQKLFFGQEEIAIP VHPTIEAACNAHPTADVFINFASFRSAAASSMSALKQPTIRVVAIIAEGVPESDTKQLISYARA NNKVIIGPATVGGIQAGAFKIGDTAGTIDNIIQCKLYRPGSVGFVSKSGGMSNEMYNTIARVTD GIYEGIAIGGDVFPGSTLSDHILRFNNIPQAN*(-) MVFMKELQLEGMFSLAQLCQTTSCVSTTYLRRTKPWRQVKFSPKPPKRYSIIISNFRSNGCLIL TSYVGEKHLLLLE*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |