Detail information of Os01g0300200_circ_g.4


General Information
CircRNA Name Os01g0300200_circ_g.4
ID in PlantcircBase osa_circ_001450
Alias Os_ciR5702
Organism Oryza sativa
Position chr1: 11000986-11001113  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os01g0300200
Parent gene annotation Similar to ATP-citrate lyase subunit B. (Os01t0300200-01);Simila
r to ATP-citrate lyase subunit B. (Os01t0300200-02);Similar to A
CLB-1 (ATP-citrate lyase B-1). (Os01t0300200-03)
Parent gene strand -
Alternative splicing Os01g0300200_circ_g.5 Os01g0300200_circ_g.6 Os01g0300200_circ_g.7 Os01g0300200_circ_g.8 Os01g0300200_circ_g.9 Os01g0300200_circ_g.10 Os01g0300200_circ_g.11 Os01g0300200_circ_g.12 Os01g0300200_circ_g.13 Os01g0300200_circ_g.14
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0300200-02:1
Os01t0300200-03:1
Os01t0300200-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAACTCCATAACCCTGTTCAATAATTGTAGACATGGGGACACCAGCATAGCAGGGTTCCTCGC
ctcaataaactgagtgcagtaacgaggaagactgcgcttgaaccacaaaagcgaaataacgtca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAATAAACTGAGTGCAGTAACGAGGAAGACTGCGCTTGAACCACAAAAGCGAAATAACGTCA
CCAACTCCATAACCCTGTTCAATAATTGTAGACATGGGGACACCAGCATAGCAGGGTTCCTCGC
Conservation Information
Conserved circRNAs NA
PMCS 0.324867057
Functional Information
Coding potential Y
Potential coding position 11001100-11001070(-)
11001086-11001070(-)
Potential amino acid sequence MLVSPCLQLLNRVMELVTLFRFCGSSAVFLVTALSLLRRGTLLCWCPHVYNY*(-)
MSTIIEQGYGVGDVISLLWFKRSLPRYCTQFIEARNPAMLVSPCLQLLNRVMELVTLFRFCGSS
AVFLVTALSLLRRGTLLCWCPHVYNY*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015