Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0300200_circ_g.4 |
ID in PlantcircBase | osa_circ_001450 |
Alias | Os_ciR5702 |
Organism | Oryza sativa |
Position | chr1: 11000986-11001113 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Os01g0300200 |
Parent gene annotation |
Similar to ATP-citrate lyase subunit B. (Os01t0300200-01);Simila r to ATP-citrate lyase subunit B. (Os01t0300200-02);Similar to A CLB-1 (ATP-citrate lyase B-1). (Os01t0300200-03) |
Parent gene strand | - |
Alternative splicing | Os01g0300200_circ_g.5 Os01g0300200_circ_g.6 Os01g0300200_circ_g.7 Os01g0300200_circ_g.8 Os01g0300200_circ_g.9 Os01g0300200_circ_g.10 Os01g0300200_circ_g.11 Os01g0300200_circ_g.12 Os01g0300200_circ_g.13 Os01g0300200_circ_g.14 |
Support reads | 2 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os01t0300200-02:1 Os01t0300200-03:1 Os01t0300200-01:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.324867057 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
11001100-11001070(-) 11001086-11001070(-) |
Potential amino acid sequence |
MLVSPCLQLLNRVMELVTLFRFCGSSAVFLVTALSLLRRGTLLCWCPHVYNY*(-) MSTIIEQGYGVGDVISLLWFKRSLPRYCTQFIEARNPAMLVSPCLQLLNRVMELVTLFRFCGSS AVFLVTALSLLRRGTLLCWCPHVYNY*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |