Detail information of Os01g0300200_circ_g.6


General Information
CircRNA Name Os01g0300200_circ_g.6
ID in PlantcircBase osa_circ_001452
Alias Os01circ09512
Organism Oryza sativa
Position chr1: 11001215-11003622  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os01g0300200
Parent gene annotation Similar to ATP-citrate lyase subunit B. (Os01t0300200-01);Simila
r to ATP-citrate lyase subunit B. (Os01t0300200-02);Similar to A
CLB-1 (ATP-citrate lyase B-1). (Os01t0300200-03)
Parent gene strand -
Alternative splicing Os01g0300200_circ_g.4 Os01g0300200_circ_g.5 Os01g0300200_circ_g.7 Os01g0300200_circ_g.8 Os01g0300200_circ_g.9 Os01g0300200_circ_g.10 Os01g0300200_circ_g.11 Os01g0300200_circ_g.12 Os01g0300200_circ_g.13 Os01g0300200_circ_g.14
Support reads 2
Tissues leaf and panicle
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os01t0300200-01:7
Os01t0300200-03:7
Os01t0300200-02:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGTTTGCAAAGCAGTTAAATTCATGCAAGGCATAATCCCTACCTTGTTGTTGGCACGTGCATA
ACTAATAAGTTGTTTTGTATCTGATTCAGGAACACCctctgtcatccgagatagtggagataat
gtgtgtgggagctcggaccttcccactcttaattgcggttttaagatcctctggaataggaggt
ggtgtaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTGTCATCCGAGATAGTGGAGATAATGTGTGTGGGAGCTCGGACCTTCCCACTCTTAATTGC
GGTTTTAAGATCCTCTGGAATAGGAGGTGGTGTAATCTCAGTAACAGGAGAGATCTTTCCGTCC
TCAACCTGGGAAATACATTTAATTTCAGAGGCTTGATACTCACAATAAAAATTCTCAAAAAGGT
TAAAAAGCTTGAAAGACACTGGCCATGACATGTAATCAGTGTTTTCAAGTCGTCCGATTAGTCG
CGACTAATCACGATTAGTCGTCCTTATCGCTACCCTGACCTCAATCAGGAACTTCGAAGCGATT
AGTTCCACCAGAAAAACTTATCGTCCGACTAATCACGACTAGTCGATCAAATTAGTCGTGGACG
ACTAGTCTGTTAGGGCTAAAAATATGTGTTGGACTTTACACTTCAGTGGCAGGCCATTTGCCCA
GCCCAAGAAGGCCTGTACCCCTCATCTAACCCTAACCAGCCATTGAAAATCTTATTATCCTTAG
TTTGTACTATACTATACTAGTATACTATGGTAATTAATACTTATAAACATCTATACATTATCCT
GGATACCCCTAGCCTATAGTCACCGACTAATCTACGATTAGTCGTGACTAATTGCGATTAGTCG
ACTAGTCGGTGCCCTTACGACTAGTCCCGACTAGACGACTTGAAATCACTGCATGTAATAATAG
TACTGCTTACCAGTTTCTCAAATGTCTCCTTGATCGCAGTTTCAAGAGCTTCATATGAAGTAGG
GACAACTGCCCCGGCATCTTTTAGTGCCTGGTTCTTAGCTTGTGCTGATTCCAACTCACCACCA
CTTTTCGCACCCTGTTGGGCCAATAAATTAATTCAGATGAGCACTTAAAATACTGTTCAACACA
GAAATTACTGAAAAGGAACAGTTTCAGACTTACAGCATGGCCAAACTGCACTTCAGACTTGAAT
AGACGAGCGCATGTCCCACTAACCCATGCAACAACAGGTTTCTGAACCTTTCCTTGTTTCAGGG
CTTCAACAAGAGAATACTCATCTTTTCCTCCAAGCTCCCCAAGAACAACCATCATTTTGACCTA
ATTCCAATAAACATGGTGCACGATGAGATGTTATTGATACAGCAATGCTCCAAGAATCCAGACG
TGGTTTACATAAAATGCATGGATGGCATTTTGAGGAAATATTACTTGCATGCTGAGCAATCCAC
ATGTCTAAATTTATATATGGCTGAGTGGGTGCAAAGGCAATAAAGATAGAACAAGATTATGGTA
AAGGAACTGTCTCAGGAAAAAAAAAAGAAGCTAATGAGTGTGACCAAAAGAACTAATTCCAACA
TTTATCTGATTCAAAAGCAAGATATAAGTTGATCCCTTGATGCAGAGTTGCATGACAAAGATAC
CAAATAAATGCCCTAAAAGAACGATTGCACTAACATTTGTGTAGAAGATGTTCAAATGTTAACA
TTCAAACCTGAGGTATGTTGTTGAAACGCAGGATGTGGTCTGACAGAGTTGAGCCAGGGAAAAC
ATCCCCTCCAATTGCAATTCCTGAGTATGTTAAAAAAGAAGTTAGCATAGGTTCAATATTCATG
AGATAACCCAATGCAGAAATGTTTACATATATCTATAAACCAGTTACCTTCATAAATACCATCT
GTCACTCTGGCAATGGTGTTGTACATCTCATTTGACATGCCACCCTGTTAATGTAATGCAAGTT
CAGTTTGTCATTGGGGTTACATATGAGCATTACAATGTACGTTAAGAGCTAAGATGTGAAGTTG
CATGTGTACAGATTAAAAGGTCAGATATTTAACAGATCAAAAGTTGGTAGTGCTACAAATGTTC
TTTTTTAAAAATAGAATATTGCCTTTTTATGGATCAGAAATAGTACGGAAGGTAAATTTCTTTT
GTACAAACAACTTTAACAAAAATCAAATAAATGCATACCGATTTAGAAACAAAGCCAACAGATC
CAGGCCTGTAAAGCTTGCATTGAATAATGTTGTCAATGGTTCCAGCAGTATCACCAATCTTGAA
AGCACCAGCTTGGATTCCTCCAACTGTTGCTGGTCCAATGATTACCTAGAAACAACAACAGTTA
CTTGGTAAAATAAACGAGAAACATGCAGGCCGCCGTCAGCGTTAGTGCCTGGCAGGCAATAAAA
TAGCATGCCAACACCAATATCTGGAATGGACAAAATACCACCATTGTGTTTACATATTATTTTA
TAAGGAGACAGTAATTTATTCATATTTAATTTGTAAGACTTTTACGGCGAGAATCTGGTGCAAA
TATCATGTTTGCAAAGCAGTTAAATTCATGCAAGGCATAATCCCTACCTTGTTGTTGGCACGTG
CATAACTAATAAGTTGTTTTGTATCTGATTCAGGAACACC
Conservation Information
Conserved circRNAs NA
PMCS 0.144616186
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015