Detail information of POPTR_0014s02480_circ_ag.1


General Information
CircRNA Name POPTR_0014s02480_circ_ag.1
ID in PlantcircBase pop_circ_003405
Alias Chr14:2122997|2127561
Organism Populus trichocarpa
Position chr14: 2072294-2076858  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing POPTR_0014s02480_circ_ag.2 POPTR_0014s02480_circ_ag.3 POPTR_0014s02480_circ_ag.4 POPTR_0014s02480_circ_ag.5 POPTR_0014s02480_circ_ag.6 POPTR_0014s02480_circ_ag.7 POPTR_0014s02480_circ_ag.8 POPTR_0014s02480_circ_ag.9
Support reads NA
Tissues stem cambium
Exon boundary   NA-NA
Splicing signals   GG-TT
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGAAAGTCATGGCGTAAGAATCATCCCCACGTAAGTTCTCTTTTCTTCCATTTTTGCCCCTCT
TTAGCATCTATTTATCCATCTATCTTGTCTTCAATTgagtcttatttttgtgaattttcgggtt
agggttttgtggctaagcctgataatgcacaagatggttctcttgatttgatggtgtggaagtg
catcatac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGTCTTATTTTTGTGAATTTTCGGGTTAGGGTTTTGTGGCTAAGCCTGATAATGCACAAGATG
GTTCTCTTGATTTGATGGTGTGGAAGTGCATCATACCTGGCAAACCCGGGGTTTGTAATTTTCT
CTATCTCTTTCTCTGGCTTTTTTCTAATTATTATTATAGATTTACACGGTTTTATTTCTGATTT
TCATCAACTGATATGATTTATTTTATTTTTTACTGTAATTAATCTCGATTAGCGAAAGGGTAGT
TGAGATTATGGGATTAATGATTGCATGAGTGGGAACACATGAATTGTAAAAAAGTTTAAGTCAA
CGTGCTATTAGTAAATCGGTGCCTTAGTTTGAGATTTTGCAAACCATTGTTTTTGTTGCTGCCC
AAATAAATAAATTCTGTAGGTTATCTTTGGGTTTGAAAGAAGTATTTTCTTGTTCTGGTTCGAT
AGAAGTATTGTGTAAGAGATTGGAAAATATGAAAGGACCTAAAAAGTGGGAGATGTTTTGATGT
GATAGCTCTTGTATTGTGCAGATCAATTGGCATTTTTATTCTTTACGAGAGGACCTGAGTCATG
ATTTCTATTTTAACCTTTTTAAGTTGCATTTGGTGTTGATTTGATTTATCTAGAGATTGATATA
CATCATTGTTTAGCTCTTTATTTTATTGTTAGAGAATAATATAAATCATATCTTGGGGTTTCAC
CTAATAGTTTAAGCTATTGAGTTGAGATGGTTTCTTGACATGGTATCAGAGCCTTGATGACCAA
GCGGTCACGAATTCGAATCCCATCATCCCTATTTATTTGATAAAAATTAAGCACAAGGTAATGT
GGGTCTGTGCAAGTTTTAAGCCCAAAGAGCTTTCACTTGAGGGGATGTGTTAGAGAATAATATA
AATCATATCTTGAGGCCTCACCTAATAGCCTAAACTATTGGGTTAAGATGGTTCCTTATATATA
CATCATCTTTCCCTCTTACATAGAAAGAAAGCGCTGTTCCTAGATTCCAGGTGGTCAGGAAATG
CATGTTCATAAAAGTCAGCATTGCATGTGGTTTACTCAACGATCTCATCTGAATGTTCATGTCC
TTAATATGCGTAGACAGATTGGGAGGGTGGCTTCTTCCCCCTCACGCTTCATTTTAGCGAGGAC
TACCCAAGCAAACCTCCAAAGTGCAAGTTCCCCCCGGGTTTCTTCCATCCTAATGTCTACCCTT
CTGGAACTGTGTGCTTATCTATCCTCAATGAGGACTATGTAAGTAGTTGGCTCACTCTTTGATA
TGTTACATATTGCAAAACGCCCAGTTTCTAAAACTCTTTTTTCTAGGGCTGGAGACCAGCCATA
ACTGTGAAGCAAATTTTAGTTGGCATTCAGGATTTGCTTGATCAACCAAATCCTGCTGATCCTG
CGCAAACTGATGGCTACCAGCTTTTTGTCCAGGTTTTTGATCTCTATATCTCAATCGTCAGCTT
TGATTTGATTGGTTTTGTATTGAATTTCTATCTTAAGCAACATGGCCGTGTCTTTGCAGGACCC
GACTGAGTACAGGAGAAAGGTGCGCCAACAAGCCAAGCAATATCCACCTGCGCTCTGATGCAAT
GGTTGCTTCACCATGTCAGCAACTTATTAGCTAGATTCCATCATATATGTCCAAACCTCCTTTA
AGTAACAGAGTGATTTAGTGTTGGTACTAGACTACGAGTTAATTGTCAAGTAGCTACGCTTCCC
ATTTCTGCACCAGAGGTTTAGCAACATGACAACTTTTGGATATAAAACCTATATCGATTGCCCA
TTAAGTTTGTTATTTATACCTATGGCGAAGCAGCATGATATACTGGAAATTGGCTGTATGGGAA
ACCATGACTGATACTTCTGAATTTGGTTAAAGCAAGTGTAAGCTTTTGAACAACTTTATCGGAT
GCTATGTTATATATGAGAGCGTGTATGATCTGTATCACATACTCGTTTTTTCACCTTTTTATGT
GTTTCAAGCATGCAATAACACTGAATAATACTATTGGAGTTAGACGTCAGTGTAGGTTCATGCG
AATCTAGGGAAGTAAATAGACCGAATAGAGTGGTTTTCGGAGATGGTTTTTGTCCTTAGGATGG
CCATCAGTGAAGAATGCTGCAGCCGCTGCTGAAGCATTGTTTTGAGTAAGATGGCCTCCAATAT
TTTATGCATTTCATGACATAGATTCACAATTGTTTAAAGCTATCACGCTGTATTTATTGAACTG
TACTGCAGGACTCTTTAATTCTTCTGAGCACATTTTGACACAAATGTGTTGTCCAATATTCATA
CAAGATTAAGATAAGATGGCCTGGAATAAATTTTATTTTGTAGTGACTGCAAGTGTGTGTGAAG
CATAACTGGGTCATTGATATTTGTTAAAAAGGTATGCAGAGGACCTTACTTTCTTTTCTCCAGT
GACTGCCATTGCGCCGAAGAGTGATTCACCTTGATCCCCCCTGTTCTGTTGCGTTTTTGTACGC
TCTAATGTCCTCATTCGTATCTACCTATCAATGGTGATTCTTCATTTGCCCACACTTTCCGAGT
CTAGTTGCCAACCGGCATTCCAAATTTAAGCACCTGAGTTATCAGCTTCTCATTGTAAAATTGC
TCTGCAAAAACTGGCCATGTGACAATGTGTACACAACACATATGCAGAGTTCCAGCCGCAGGGA
GTAAATAACTCTCCCAATCCCAACTGTTGGATTGTCCATTATTTGCACCTGCGGGGGCAATACC
TTTATAACGAATCCTTCTGCCACTTTTCTTCAATTCATCCTCGTATTCTTCTGGCAGCCACCAG
TCTTCCTGCTGATACAGGTTGTTGTTATCTTCTGTCAGATTTCAGGATTTTTCCTACATCCCAA
TTGAAAGACTGCCTTGAATCTTCAAGTGCACTAGCAATTTCTGATATTTGACTCTTGCTGAATC
TGATGAGGCTTCCAAAACAAATGCAGAGAACGGACTTTGGTTTCTTAGAATCCAGCCAATGCAG
GCAACTGTGTTTACACATTGAAGCCTTGTCACCTCTTTCTAGCCTATCATCTGCATTTCTATTG
AACAGAGATACGGGACCCGAGCCATGCTTTTATTCCAGTAACTTTTCTGAAATGATCAACACAG
GCTAGCTCTTCCTTTCAGCCTTCTTCAGTTCATCAAACAAAGAAGAGAGAACTTCGTTGTCAGG
GACAAGTGATTCTGTCTCAGATGCGACATTGCCGTGAGGTTGACAATAATCAATGCTGTTTGCA
ACACCAAGATTGAAGAATCCACTGCCACTAAAGGCAAGCCTTGGTATGCCAAGCTCAATGGCAA
CATCAACAGTCCATGGAAACTGACAATCAGAGGCAGTGCAAGATCGTTTTAACCTGTGGTTGCA
GCAACTCTATTCCATGAAATAATTTTAAAGCCATTTTCGGGGCCCCTGTGGAGGATAAATGTTC
ACAGCCTTCAGGCAAACCAGCTTTTTTAGCACGGCAATCTGTATGATATGATCAGCAGGGATGT
TCACACTTCACAGTATAAACCATATTTTCGCTCCTTTAACTTACAAATGTTTCATAATATAATT
TAAAATTTCTCAATATCTACCTTCTAATTTTGCAAAAAAATCCAACTTTTAATCCCAATTCTAG
ATACCTGAGGCTATTTTATGCAAATAAGGTATTTTGGTGCACCACAGTTTATTATCTTAAAATA
GAAGAAATAGAGACAATAAGATAATGAGAAAAAAATATATTTGGTTGAATAAACTTAGATAGAA
ATATAAAATAAATCTTTAGAAGGGATTTATGTAATTTTAAAATAAAAAATACAAAAAAAAACAT
GTCTAATCTATCTCAATTATTTTCATCTTTTCTATCATTTTTAGCGATTAAACAGTCTCCCGAG
AAAGTAATGAATGTTGCCATGAAGATTCCACATCAGAAGAATCTCTGTTTTAAAAAATAATAAT
AATAAGGGATAATTATAAAAATTCTCTTATAATTTTATCTGAATTTTACTTTTTCTCTATATTT
TCATAAATTATATTTTTTATCCTATAGTTTATATGTTTAGTAACAATTTACATCTTTAACAATG
GACTTGTTTAAAAAAGTTTATATGATTCAGTGTAATTTATAAAAATATAAAAAACAAGTAAAAT
TTAAATAAAAAGTTTTTGTAATTATTCTTAATAATAATTAATGTCCAAAACTCGCCTGACAAAT
TGTGGGCTTTTCTAAATTTGGTAGAGAGGCCCACTGCTGATCAATCGTCCCAAAAGTCAAAACC
AATTTCATTTTATTTGCAAGCTATGAATGAAGAGTCGGTCATTTGGTCTCTTCCAAGTCCGAGT
AAAAAACACTCCAAATCATCCATCATCCAGAAAACAAGGTAGTCCCTGCAGAGACATAGAGCGT
GAGAGATCATGTCAGGAGGAGGCATAGCTCGTGGTCGTCTTGCTGAAGAGAGAAAGTCATGGCG
TAAGAATCATCCCCACGTAAGTTCTCTTTTCTTCCATTTTTGCCCCTCTTTAGCATCTATTTAT
CCATCTATCTTGTCTTCAATT
Conservation Information
Conserved circRNAs NA
PMCS 0.099771411
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zheng et al., 2020