Detail information of POPTR_0014s02480_circ_ag.5


General Information
CircRNA Name POPTR_0014s02480_circ_ag.5
ID in PlantcircBase pop_circ_003409
Alias Chr14:2124356|2128945
Organism Populus trichocarpa
Position chr14: 2073653-2078242  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing POPTR_0014s02480_circ_ag.1 POPTR_0014s02480_circ_ag.2 POPTR_0014s02480_circ_ag.3 POPTR_0014s02480_circ_ag.4 POPTR_0014s02480_circ_ag.6 POPTR_0014s02480_circ_ag.7 POPTR_0014s02480_circ_ag.8 POPTR_0014s02480_circ_ag.9
Support reads NA
Tissues stem cambium
Exon boundary   NA-NA
Splicing signals   TT-TT
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGTTGGCTCACTCTTTCATATTTCACATATTGCAAAACGCCCGGTTTCTAAAACTATTTTTTC
TAGGGCTGGAGACCAGCCATTACTGTGAAGCAAATTttagttggcattcaggatttgcttgatc
aaccaaatcctgctgatcctgcgcaaactgatggctaccagctttttgtccaggtttttgatct
ctatatct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTAGTTGGCATTCAGGATTTGCTTGATCAACCAAATCCTGCTGATCCTGCGCAAACTGATGGCT
ACCAGCTTTTTGTCCAGGTTTTTGATCTCTATATCTCAATCGTCAGCTTTGATTTGATTGGTTT
TGTATTGAATTTCTATCTTAAGCAACATGGCCGTGTCTTTGCAGGACCCGACTGAGTACAGGAG
AAAGGTGCGCCAACAAGCCAAGCAATATCCACCTGCGCTCTGATGCAATGGTTGCTTCACCATG
TCAGCAACTTATTAGCTAGATTCCATCATATATGTCCAAACCTCCTTTAAGTAACAGAGTGATT
TAGTGTTGGTACTAGACTACGAGTTAATTGTCAAGTAGCTACGCTTCCCATTTCTGCACCAGAG
GTTTAGCAACATGACAACTTTTGGATATAAAACCTATATCGATTGCCCATTAAGTTTGTTATTT
ATACCTATGGCGAAGCAGCATGATATACTGGAAATTGGCTGTATGGGAAACCATGACTGATACT
TCTGAATTTGGTTAAAGCAAGTGTAAGCTTTTGAACAACTTTATCGGATGCTATGTTATATATG
AGAGCGTGTATGATCTGTATCACATACTCGTTTTTTCACCTTTTTATGTGTTTCAAGCATGCAA
TAACACTGAATAATACTATTGGAGTTAGACGTCAGTGTAGGTTCATGCGAATCTAGGGAAGTAA
ATAGACCGAATAGAGTGGTTTTCGGAGATGGTTTTTGTCCTTAGGATGGCCATCAGTGAAGAAT
GCTGCAGCCGCTGCTGAAGCATTGTTTTGAGTAAGATGGCCTCCAATATTTTATGCATTTCATG
ACATAGATTCACAATTGTTTAAAGCTATCACGCTGTATTTATTGAACTGTACTGCAGGACTCTT
TAATTCTTCTGAGCACATTTTGACACAAATGTGTTGTCCAATATTCATACAAGATTAAGATAAG
ATGGCCTGGAATAAATTTTATTTTGTAGTGACTGCAAGTGTGTGTGAAGCATAACTGGGTCATT
GATATTTGTTAAAAAGGTATGCAGAGGACCTTACTTTCTTTTCTCCAGTGACTGCCATTGCGCC
GAAGAGTGATTCACCTTGATCCCCCCTGTTCTGTTGCGTTTTTGTACGCTCTAATGTCCTCATT
CGTATCTACCTATCAATGGTGATTCTTCATTTGCCCACACTTTCCGAGTCTAGTTGCCAACCGG
CATTCCAAATTTAAGCACCTGAGTTATCAGCTTCTCATTGTAAAATTGCTCTGCAAAAACTGGC
CATGTGACAATGTGTACACAACACATATGCAGAGTTCCAGCCGCAGGGAGTAAATAACTCTCCC
AATCCCAACTGTTGGATTGTCCATTATTTGCACCTGCGGGGGCAATACCTTTATAACGAATCCT
TCTGCCACTTTTCTTCAATTCATCCTCGTATTCTTCTGGCAGCCACCAGTCTTCCTGCTGATAC
AGGTTGTTGTTATCTTCTGTCAGATTTCAGGATTTTTCCTACATCCCAATTGAAAGACTGCCTT
GAATCTTCAAGTGCACTAGCAATTTCTGATATTTGACTCTTGCTGAATCTGATGAGGCTTCCAA
AACAAATGCAGAGAACGGACTTTGGTTTCTTAGAATCCAGCCAATGCAGGCAACTGTGTTTACA
CATTGAAGCCTTGTCACCTCTTTCTAGCCTATCATCTGCATTTCTATTGAACAGAGATACGGGA
CCCGAGCCATGCTTTTATTCCAGTAACTTTTCTGAAATGATCAACACAGGCTAGCTCTTCCTTT
CAGCCTTCTTCAGTTCATCAAACAAAGAAGAGAGAACTTCGTTGTCAGGGACAAGTGATTCTGT
CTCAGATGCGACATTGCCGTGAGGTTGACAATAATCAATGCTGTTTGCAACACCAAGATTGAAG
AATCCACTGCCACTAAAGGCAAGCCTTGGTATGCCAAGCTCAATGGCAACATCAACAGTCCATG
GAAACTGACAATCAGAGGCAGTGCAAGATCGTTTTAACCTGTGGTTGCAGCAACTCTATTCCAT
GAAATAATTTTAAAGCCATTTTCGGGGCCCCTGTGGAGGATAAATGTTCACAGCCTTCAGGCAA
ACCAGCTTTTTTAGCACGGCAATCTGTATGATATGATCAGCAGGGATGTTCACACTTCACAGTA
TAAACCATATTTTCGCTCCTTTAACTTACAAATGTTTCATAATATAATTTAAAATTTCTCAATA
TCTACCTTCTAATTTTGCAAAAAAATCCAACTTTTAATCCCAATTCTAGATACCTGAGGCTATT
TTATGCAAATAAGGTATTTTGGTGCACCACAGTTTATTATCTTAAAATAGAAGAAATAGAGACA
ATAAGATAATGAGAAAAAAATATATTTGGTTGAATAAACTTAGATAGAAATATAAAATAAATCT
TTAGAAGGGATTTATGTAATTTTAAAATAAAAAATACAAAAAAAAACATGTCTAATCTATCTCA
ATTATTTTCATCTTTTCTATCATTTTTAGCGATTAAACAGTCTCCCGAGAAAGTAATGAATGTT
GCCATGAAGATTCCACATCAGAAGAATCTCTGTTTTAAAAAATAATAATAATAAGGGATAATTA
TAAAAATTCTCTTATAATTTTATCTGAATTTTACTTTTTCTCTATATTTTCATAAATTATATTT
TTTATCCTATAGTTTATATGTTTAGTAACAATTTACATCTTTAACAATGGACTTGTTTAAAAAA
GTTTATATGATTCAGTGTAATTTATAAAAATATAAAAAACAAGTAAAATTTAAATAAAAAGTTT
TTGTAATTATTCTTAATAATAATTAATGTCCAAAACTCGCCTGACAAATTGTGGGCTTTTCTAA
ATTTGGTAGAGAGGCCCACTGCTGATCAATCGTCCCAAAAGTCAAAACCAATTTCATTTTATTT
GCAAGCTATGAATGAAGAGTCGGTCATTTGGTCTCTTCCAAGTCCGAGTAAAAAACACTCCAAA
TCATCCATCATCCAGAAAACAAGGTAGTCCCTGCAGAGACATAGAGCGTGAGAGATCATGTCAG
GAGGAGGCATAGCTCGTGGTCGTCTTGCTGAAGAGAGAAAGTCATGGCGTAAGAATCATCCCCA
CGTAAGTTCTCTTTTCTTCCATTTTTGCCCCTCTTTAGCATCTATTTATCCATCTATCTTGTCT
TCAATTGGGTCTTATTTTTGTGAATTTTCGGTTTAGGGTTTTGTGGCTAAGCCTGATAATGCAC
AAGATGGTTCTCTTGATTTGATGGTGTGGAAGTGCATCATACCTGGCAAACCCGGGGTTTGTAA
TTTTTTCTATCTCTCTCTGTGGCTTTTTTTTTTTAATTATTATTATAGATTTACACGGTTTTAT
TTCTGATTTTCATCAACTGATATGATTTATTTTATTTTTTACTGTAATTAGTCTTGATTAGCGA
AAGGGTAGTTGAGATTGGTGGGATAATATAGGATTAATGACCGTGGATAATAAAAAAAGTTGAA
GTCAACGTATTATTTGGTAGGTGGAAGGCTTATGTGTTAGGAAATTGGTGTCATAGTGTGAAAT
TTTGTGAACATTTGTTTTTGTTGCTGCCCGAATAAATAATCTCTTTAGGATGTCTTTGGGTTTG
AAAGAAGTGTTTTCTTGCTCTGGTTCTATAGGAGTATCTCACTCGATTTTTGTTTTGTTTTTGG
TTTACGGGAAGGGGTTTCTTCATATGTGATGGGAGTGGCAATGCCTTGATGGTCCTTTTTGTAT
TCCTTCTCATTCCTTTCAAGGCCCCAAGCCGCCAAACTTCGAGCTTAGAAATGCCATTCATGTC
AGCGTCCCTTTTGGTAATGGACAGTTCTATGCAGCATAAGGCCACTGTACTTTTTAGCATTTAC
TACAAGTTTGAAAAATGAATCTTAATATGCCACATTAGAAGTTGATCCTTTTAAAATATTTTCG
AGATCCTCAGAGATTGAGATGTTGTATAGGATTGGAAAATATGTAAGGACCTAAGAAGTGGGAG
ATGTTTTGATGTGATAGCTCTTTTATTGTCAATTGGCATTGTTATTCTTTATGAGAGGACCTGA
GTCGATTTTTCTTCTTTAACCCTTTTAAGTTGCATTTGGTGCTCATTTGATTTATCTGCAGTTT
GATATGTATCATTGTTGACCTCTTTACATTATCTTTCCACCCCCTCCTACAAAGAAAGAGAGAG
CCGTTTCTAGTTTCTAGGTTATCAGGAAATGCACATTCATAAAAGTCAGCATTACATGCTGTTT
GCTCAACGATCTCATCTGAATGTTCATGTCCTTAATGTGCACAGACAGATTGGGAGGGTGGCTT
CTTCCCCCTCTCGCTTCATTTCAGTGAGGACTACCCAAGCAAACCTCCAAAGTGCAAGTTCCCC
CAAGGTTTCTTCCACCCTAATGTCTACCCTTCAGGAACTGTGTGCTTATCTATTCTCAATGAGG
ACTATGTAAGTAGTTGGCTCACTCTTTCATATTTCACATATTGCAAAACGCCCGGTTTCTAAAA
CTATTTTTTCTAGGGCTGGAGACCAGCCATTACTGTGAAGCAAATT
Conservation Information
Conserved circRNAs NA
PMCS 0.725384739
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zheng et al., 2020