Detail information of POPTR_0014s02480_circ_ag.4


General Information
CircRNA Name POPTR_0014s02480_circ_ag.4
ID in PlantcircBase pop_circ_003408
Alias Chr14:2124341|2128930
Organism Populus trichocarpa
Position chr14: 2073638-2078227  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing POPTR_0014s02480_circ_ag.1 POPTR_0014s02480_circ_ag.2 POPTR_0014s02480_circ_ag.3 POPTR_0014s02480_circ_ag.5 POPTR_0014s02480_circ_ag.6 POPTR_0014s02480_circ_ag.7 POPTR_0014s02480_circ_ag.8 POPTR_0014s02480_circ_ag.9
Support reads NA
Tissues stem cambium
Exon boundary   NA-NA
Splicing signals   AC-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAGGACTATGTAAGTAGTTGGCTCACTCTTTCATATTTCACATATTGCAAAACGCCCGGTTTC
TAAAACTATTTTTTCTAGGGCTGGAGACCAGCCATTactgtgaagcaaattttagttggcattc
aggatttgcttgatcaaccaaatcctgctgatcctgcgcaaactgatggctaccagctttttgt
ccaggttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACTGTGAAGCAAATTTTAGTTGGCATTCAGGATTTGCTTGATCAACCAAATCCTGCTGATCCTG
CGCAAACTGATGGCTACCAGCTTTTTGTCCAGGTTTTTGATCTCTATATCTCAATCGTCAGCTT
TGATTTGATTGGTTTTGTATTGAATTTCTATCTTAAGCAACATGGCCGTGTCTTTGCAGGACCC
GACTGAGTACAGGAGAAAGGTGCGCCAACAAGCCAAGCAATATCCACCTGCGCTCTGATGCAAT
GGTTGCTTCACCATGTCAGCAACTTATTAGCTAGATTCCATCATATATGTCCAAACCTCCTTTA
AGTAACAGAGTGATTTAGTGTTGGTACTAGACTACGAGTTAATTGTCAAGTAGCTACGCTTCCC
ATTTCTGCACCAGAGGTTTAGCAACATGACAACTTTTGGATATAAAACCTATATCGATTGCCCA
TTAAGTTTGTTATTTATACCTATGGCGAAGCAGCATGATATACTGGAAATTGGCTGTATGGGAA
ACCATGACTGATACTTCTGAATTTGGTTAAAGCAAGTGTAAGCTTTTGAACAACTTTATCGGAT
GCTATGTTATATATGAGAGCGTGTATGATCTGTATCACATACTCGTTTTTTCACCTTTTTATGT
GTTTCAAGCATGCAATAACACTGAATAATACTATTGGAGTTAGACGTCAGTGTAGGTTCATGCG
AATCTAGGGAAGTAAATAGACCGAATAGAGTGGTTTTCGGAGATGGTTTTTGTCCTTAGGATGG
CCATCAGTGAAGAATGCTGCAGCCGCTGCTGAAGCATTGTTTTGAGTAAGATGGCCTCCAATAT
TTTATGCATTTCATGACATAGATTCACAATTGTTTAAAGCTATCACGCTGTATTTATTGAACTG
TACTGCAGGACTCTTTAATTCTTCTGAGCACATTTTGACACAAATGTGTTGTCCAATATTCATA
CAAGATTAAGATAAGATGGCCTGGAATAAATTTTATTTTGTAGTGACTGCAAGTGTGTGTGAAG
CATAACTGGGTCATTGATATTTGTTAAAAAGGTATGCAGAGGACCTTACTTTCTTTTCTCCAGT
GACTGCCATTGCGCCGAAGAGTGATTCACCTTGATCCCCCCTGTTCTGTTGCGTTTTTGTACGC
TCTAATGTCCTCATTCGTATCTACCTATCAATGGTGATTCTTCATTTGCCCACACTTTCCGAGT
CTAGTTGCCAACCGGCATTCCAAATTTAAGCACCTGAGTTATCAGCTTCTCATTGTAAAATTGC
TCTGCAAAAACTGGCCATGTGACAATGTGTACACAACACATATGCAGAGTTCCAGCCGCAGGGA
GTAAATAACTCTCCCAATCCCAACTGTTGGATTGTCCATTATTTGCACCTGCGGGGGCAATACC
TTTATAACGAATCCTTCTGCCACTTTTCTTCAATTCATCCTCGTATTCTTCTGGCAGCCACCAG
TCTTCCTGCTGATACAGGTTGTTGTTATCTTCTGTCAGATTTCAGGATTTTTCCTACATCCCAA
TTGAAAGACTGCCTTGAATCTTCAAGTGCACTAGCAATTTCTGATATTTGACTCTTGCTGAATC
TGATGAGGCTTCCAAAACAAATGCAGAGAACGGACTTTGGTTTCTTAGAATCCAGCCAATGCAG
GCAACTGTGTTTACACATTGAAGCCTTGTCACCTCTTTCTAGCCTATCATCTGCATTTCTATTG
AACAGAGATACGGGACCCGAGCCATGCTTTTATTCCAGTAACTTTTCTGAAATGATCAACACAG
GCTAGCTCTTCCTTTCAGCCTTCTTCAGTTCATCAAACAAAGAAGAGAGAACTTCGTTGTCAGG
GACAAGTGATTCTGTCTCAGATGCGACATTGCCGTGAGGTTGACAATAATCAATGCTGTTTGCA
ACACCAAGATTGAAGAATCCACTGCCACTAAAGGCAAGCCTTGGTATGCCAAGCTCAATGGCAA
CATCAACAGTCCATGGAAACTGACAATCAGAGGCAGTGCAAGATCGTTTTAACCTGTGGTTGCA
GCAACTCTATTCCATGAAATAATTTTAAAGCCATTTTCGGGGCCCCTGTGGAGGATAAATGTTC
ACAGCCTTCAGGCAAACCAGCTTTTTTAGCACGGCAATCTGTATGATATGATCAGCAGGGATGT
TCACACTTCACAGTATAAACCATATTTTCGCTCCTTTAACTTACAAATGTTTCATAATATAATT
TAAAATTTCTCAATATCTACCTTCTAATTTTGCAAAAAAATCCAACTTTTAATCCCAATTCTAG
ATACCTGAGGCTATTTTATGCAAATAAGGTATTTTGGTGCACCACAGTTTATTATCTTAAAATA
GAAGAAATAGAGACAATAAGATAATGAGAAAAAAATATATTTGGTTGAATAAACTTAGATAGAA
ATATAAAATAAATCTTTAGAAGGGATTTATGTAATTTTAAAATAAAAAATACAAAAAAAAACAT
GTCTAATCTATCTCAATTATTTTCATCTTTTCTATCATTTTTAGCGATTAAACAGTCTCCCGAG
AAAGTAATGAATGTTGCCATGAAGATTCCACATCAGAAGAATCTCTGTTTTAAAAAATAATAAT
AATAAGGGATAATTATAAAAATTCTCTTATAATTTTATCTGAATTTTACTTTTTCTCTATATTT
TCATAAATTATATTTTTTATCCTATAGTTTATATGTTTAGTAACAATTTACATCTTTAACAATG
GACTTGTTTAAAAAAGTTTATATGATTCAGTGTAATTTATAAAAATATAAAAAACAAGTAAAAT
TTAAATAAAAAGTTTTTGTAATTATTCTTAATAATAATTAATGTCCAAAACTCGCCTGACAAAT
TGTGGGCTTTTCTAAATTTGGTAGAGAGGCCCACTGCTGATCAATCGTCCCAAAAGTCAAAACC
AATTTCATTTTATTTGCAAGCTATGAATGAAGAGTCGGTCATTTGGTCTCTTCCAAGTCCGAGT
AAAAAACACTCCAAATCATCCATCATCCAGAAAACAAGGTAGTCCCTGCAGAGACATAGAGCGT
GAGAGATCATGTCAGGAGGAGGCATAGCTCGTGGTCGTCTTGCTGAAGAGAGAAAGTCATGGCG
TAAGAATCATCCCCACGTAAGTTCTCTTTTCTTCCATTTTTGCCCCTCTTTAGCATCTATTTAT
CCATCTATCTTGTCTTCAATTGGGTCTTATTTTTGTGAATTTTCGGTTTAGGGTTTTGTGGCTA
AGCCTGATAATGCACAAGATGGTTCTCTTGATTTGATGGTGTGGAAGTGCATCATACCTGGCAA
ACCCGGGGTTTGTAATTTTTTCTATCTCTCTCTGTGGCTTTTTTTTTTTAATTATTATTATAGA
TTTACACGGTTTTATTTCTGATTTTCATCAACTGATATGATTTATTTTATTTTTTACTGTAATT
AGTCTTGATTAGCGAAAGGGTAGTTGAGATTGGTGGGATAATATAGGATTAATGACCGTGGATA
ATAAAAAAAGTTGAAGTCAACGTATTATTTGGTAGGTGGAAGGCTTATGTGTTAGGAAATTGGT
GTCATAGTGTGAAATTTTGTGAACATTTGTTTTTGTTGCTGCCCGAATAAATAATCTCTTTAGG
ATGTCTTTGGGTTTGAAAGAAGTGTTTTCTTGCTCTGGTTCTATAGGAGTATCTCACTCGATTT
TTGTTTTGTTTTTGGTTTACGGGAAGGGGTTTCTTCATATGTGATGGGAGTGGCAATGCCTTGA
TGGTCCTTTTTGTATTCCTTCTCATTCCTTTCAAGGCCCCAAGCCGCCAAACTTCGAGCTTAGA
AATGCCATTCATGTCAGCGTCCCTTTTGGTAATGGACAGTTCTATGCAGCATAAGGCCACTGTA
CTTTTTAGCATTTACTACAAGTTTGAAAAATGAATCTTAATATGCCACATTAGAAGTTGATCCT
TTTAAAATATTTTCGAGATCCTCAGAGATTGAGATGTTGTATAGGATTGGAAAATATGTAAGGA
CCTAAGAAGTGGGAGATGTTTTGATGTGATAGCTCTTTTATTGTCAATTGGCATTGTTATTCTT
TATGAGAGGACCTGAGTCGATTTTTCTTCTTTAACCCTTTTAAGTTGCATTTGGTGCTCATTTG
ATTTATCTGCAGTTTGATATGTATCATTGTTGACCTCTTTACATTATCTTTCCACCCCCTCCTA
CAAAGAAAGAGAGAGCCGTTTCTAGTTTCTAGGTTATCAGGAAATGCACATTCATAAAAGTCAG
CATTACATGCTGTTTGCTCAACGATCTCATCTGAATGTTCATGTCCTTAATGTGCACAGACAGA
TTGGGAGGGTGGCTTCTTCCCCCTCTCGCTTCATTTCAGTGAGGACTACCCAAGCAAACCTCCA
AAGTGCAAGTTCCCCCAAGGTTTCTTCCACCCTAATGTCTACCCTTCAGGAACTGTGTGCTTAT
CTATTCTCAATGAGGACTATGTAAGTAGTTGGCTCACTCTTTCATATTTCACATATTGCAAAAC
GCCCGGTTTCTAAAACTATTTTTTCTAGGGCTGGAGACCAGCCATT
Conservation Information
Conserved circRNAs NA
PMCS 0.600983833
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zheng et al., 2020