Detail information of POPTR_0014s02480_circ_ag.9


General Information
CircRNA Name POPTR_0014s02480_circ_ag.9
ID in PlantcircBase pop_circ_003413
Alias Chr14:2124807-2129442
Organism Populus trichocarpa
Position chr14: 2074104-2078739  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   ag-circRNA
Identification method CIRI2; circRNA_finder
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing POPTR_0014s02480_circ_ag.1 POPTR_0014s02480_circ_ag.2 POPTR_0014s02480_circ_ag.3 POPTR_0014s02480_circ_ag.4 POPTR_0014s02480_circ_ag.5 POPTR_0014s02480_circ_ag.6 POPTR_0014s02480_circ_ag.7 POPTR_0014s02480_circ_ag.8
Support reads 3,8,2,4,7,3
Tissues leaf; cambium; xylem
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTCATGCTTTGCCACATGTTCCTGCATTGCAAGTTAGCAACATGACAACTTTTGGATATAAAA
CCTATCTTGATTGCCCATTAAGATTGTTATTTATACcctatggcgaagcagcatgatatactgg
aaattggctgtatgggaaaccatgactgatacttctgaatttggttaaagcaagtgtaagcttt
tgaacaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTATGGCGAAGCAGCATGATATACTGGAAATTGGCTGTATGGGAAACCATGACTGATACTTCT
GAATTTGGTTAAAGCAAGTGTAAGCTTTTGAACAACTTTATCGGATGCTATGTTATATATGAGA
GCGTGTATGATCTGTATCACATACTCGTTTTTTCACCTTTTTATGTGTTTCAAGCATGCAATAA
CACTGAATAATACTATTGGAGTTAGACGTCAGTGTAGGTTCATGCGAATCTAGGGAAGTAAATA
GACCGAATAGAGTGGTTTTCGGAGATGGTTTTTGTCCTTAGGATGGCCATCAGTGAAGAATGCT
GCAGCCGCTGCTGAAGCATTGTTTTGAGTAAGATGGCCTCCAATATTTTATGCATTTCATGACA
TAGATTCACAATTGTTTAAAGCTATCACGCTGTATTTATTGAACTGTACTGCAGGACTCTTTAA
TTCTTCTGAGCACATTTTGACACAAATGTGTTGTCCAATATTCATACAAGATTAAGATAAGATG
GCCTGGAATAAATTTTATTTTGTAGTGACTGCAAGTGTGTGTGAAGCATAACTGGGTCATTGAT
ATTTGTTAAAAAGGTATGCAGAGGACCTTACTTTCTTTTCTCCAGTGACTGCCATTGCGCCGAA
GAGTGATTCACCTTGATCCCCCCTGTTCTGTTGCGTTTTTGTACGCTCTAATGTCCTCATTCGT
ATCTACCTATCAATGGTGATTCTTCATTTGCCCACACTTTCCGAGTCTAGTTGCCAACCGGCAT
TCCAAATTTAAGCACCTGAGTTATCAGCTTCTCATTGTAAAATTGCTCTGCAAAAACTGGCCAT
GTGACAATGTGTACACAACACATATGCAGAGTTCCAGCCGCAGGGAGTAAATAACTCTCCCAAT
CCCAACTGTTGGATTGTCCATTATTTGCACCTGCGGGGGCAATACCTTTATAACGAATCCTTCT
GCCACTTTTCTTCAATTCATCCTCGTATTCTTCTGGCAGCCACCAGTCTTCCTGCTGATACAGG
TTGTTGTTATCTTCTGTCAGATTTCAGGATTTTTCCTACATCCCAATTGAAAGACTGCCTTGAA
TCTTCAAGTGCACTAGCAATTTCTGATATTTGACTCTTGCTGAATCTGATGAGGCTTCCAAAAC
AAATGCAGAGAACGGACTTTGGTTTCTTAGAATCCAGCCAATGCAGGCAACTGTGTTTACACAT
TGAAGCCTTGTCACCTCTTTCTAGCCTATCATCTGCATTTCTATTGAACAGAGATACGGGACCC
GAGCCATGCTTTTATTCCAGTAACTTTTCTGAAATGATCAACACAGGCTAGCTCTTCCTTTCAG
CCTTCTTCAGTTCATCAAACAAAGAAGAGAGAACTTCGTTGTCAGGGACAAGTGATTCTGTCTC
AGATGCGACATTGCCGTGAGGTTGACAATAATCAATGCTGTTTGCAACACCAAGATTGAAGAAT
CCACTGCCACTAAAGGCAAGCCTTGGTATGCCAAGCTCAATGGCAACATCAACAGTCCATGGAA
ACTGACAATCAGAGGCAGTGCAAGATCGTTTTAACCTGTGGTTGCAGCAACTCTATTCCATGAA
ATAATTTTAAAGCCATTTTCGGGGCCCCTGTGGAGGATAAATGTTCACAGCCTTCAGGCAAACC
AGCTTTTTTAGCACGGCAATCTGTATGATATGATCAGCAGGGATGTTCACACTTCACAGTATAA
ACCATATTTTCGCTCCTTTAACTTACAAATGTTTCATAATATAATTTAAAATTTCTCAATATCT
ACCTTCTAATTTTGCAAAAAAATCCAACTTTTAATCCCAATTCTAGATACCTGAGGCTATTTTA
TGCAAATAAGGTATTTTGGTGCACCACAGTTTATTATCTTAAAATAGAAGAAATAGAGACAATA
AGATAATGAGAAAAAAATATATTTGGTTGAATAAACTTAGATAGAAATATAAAATAAATCTTTA
GAAGGGATTTATGTAATTTTAAAATAAAAAATACAAAAAAAAACATGTCTAATCTATCTCAATT
ATTTTCATCTTTTCTATCATTTTTAGCGATTAAACAGTCTCCCGAGAAAGTAATGAATGTTGCC
ATGAAGATTCCACATCAGAAGAATCTCTGTTTTAAAAAATAATAATAATAAGGGATAATTATAA
AAATTCTCTTATAATTTTATCTGAATTTTACTTTTTCTCTATATTTTCATAAATTATATTTTTT
ATCCTATAGTTTATATGTTTAGTAACAATTTACATCTTTAACAATGGACTTGTTTAAAAAAGTT
TATATGATTCAGTGTAATTTATAAAAATATAAAAAACAAGTAAAATTTAAATAAAAAGTTTTTG
TAATTATTCTTAATAATAATTAATGTCCAAAACTCGCCTGACAAATTGTGGGCTTTTCTAAATT
TGGTAGAGAGGCCCACTGCTGATCAATCGTCCCAAAAGTCAAAACCAATTTCATTTTATTTGCA
AGCTATGAATGAAGAGTCGGTCATTTGGTCTCTTCCAAGTCCGAGTAAAAAACACTCCAAATCA
TCCATCATCCAGAAAACAAGGTAGTCCCTGCAGAGACATAGAGCGTGAGAGATCATGTCAGGAG
GAGGCATAGCTCGTGGTCGTCTTGCTGAAGAGAGAAAGTCATGGCGTAAGAATCATCCCCACGT
AAGTTCTCTTTTCTTCCATTTTTGCCCCTCTTTAGCATCTATTTATCCATCTATCTTGTCTTCA
ATTGGGTCTTATTTTTGTGAATTTTCGGTTTAGGGTTTTGTGGCTAAGCCTGATAATGCACAAG
ATGGTTCTCTTGATTTGATGGTGTGGAAGTGCATCATACCTGGCAAACCCGGGGTTTGTAATTT
TTTCTATCTCTCTCTGTGGCTTTTTTTTTTTAATTATTATTATAGATTTACACGGTTTTATTTC
TGATTTTCATCAACTGATATGATTTATTTTATTTTTTACTGTAATTAGTCTTGATTAGCGAAAG
GGTAGTTGAGATTGGTGGGATAATATAGGATTAATGACCGTGGATAATAAAAAAAGTTGAAGTC
AACGTATTATTTGGTAGGTGGAAGGCTTATGTGTTAGGAAATTGGTGTCATAGTGTGAAATTTT
GTGAACATTTGTTTTTGTTGCTGCCCGAATAAATAATCTCTTTAGGATGTCTTTGGGTTTGAAA
GAAGTGTTTTCTTGCTCTGGTTCTATAGGAGTATCTCACTCGATTTTTGTTTTGTTTTTGGTTT
ACGGGAAGGGGTTTCTTCATATGTGATGGGAGTGGCAATGCCTTGATGGTCCTTTTTGTATTCC
TTCTCATTCCTTTCAAGGCCCCAAGCCGCCAAACTTCGAGCTTAGAAATGCCATTCATGTCAGC
GTCCCTTTTGGTAATGGACAGTTCTATGCAGCATAAGGCCACTGTACTTTTTAGCATTTACTAC
AAGTTTGAAAAATGAATCTTAATATGCCACATTAGAAGTTGATCCTTTTAAAATATTTTCGAGA
TCCTCAGAGATTGAGATGTTGTATAGGATTGGAAAATATGTAAGGACCTAAGAAGTGGGAGATG
TTTTGATGTGATAGCTCTTTTATTGTCAATTGGCATTGTTATTCTTTATGAGAGGACCTGAGTC
GATTTTTCTTCTTTAACCCTTTTAAGTTGCATTTGGTGCTCATTTGATTTATCTGCAGTTTGAT
ATGTATCATTGTTGACCTCTTTACATTATCTTTCCACCCCCTCCTACAAAGAAAGAGAGAGCCG
TTTCTAGTTTCTAGGTTATCAGGAAATGCACATTCATAAAAGTCAGCATTACATGCTGTTTGCT
CAACGATCTCATCTGAATGTTCATGTCCTTAATGTGCACAGACAGATTGGGAGGGTGGCTTCTT
CCCCCTCTCGCTTCATTTCAGTGAGGACTACCCAAGCAAACCTCCAAAGTGCAAGTTCCCCCAA
GGTTTCTTCCACCCTAATGTCTACCCTTCAGGAACTGTGTGCTTATCTATTCTCAATGAGGACT
ATGTAAGTAGTTGGCTCACTCTTTCATATTTCACATATTGCAAAACGCCCGGTTTCTAAAACTA
TTTTTTCTAGGGCTGGAGACCAGCCATTACTGTGAAGCAAATTTTAGTTGGCATTCAGGATTTG
CTTGATCAACCAAATCCTTCTGATCCTGCGCAAACTGATGGCTATCAGCTTTTTGTCCAGGTTT
TTTATTTCAACATCTCAATCATCAGCTTTGATTTGATTGGTTTCGTATTGAATTTCTATCTTAA
GCAACATGGCTGTGACTCTGCAGGACCCGACTGAGTACAGGAGAAGGGTGCGCCAACAAGCCAA
GCAATATCCACCTGCGCTCTGATGCAATGGCTGCTTCACCATGTCTGCAACATATTAGTTAGAT
TCCGTCATATATGTCCAAACCTCGTTTAAGTAACAGAGTGATTTAGTGTTGCTACTTGACTGCT
AGTTAATTGTCAATTGCAGCTATGCTTCCCATTTCTGTACCGGAGGGTGCTTTTTTAGTCATGC
TTTGCCACATGTTCCTGCATTGCAAGTTAGCAACATGACAACTTTTGGATATAAAACCTATCTT
GATTGCCCATTAAGATTGTTATTTATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.103955486
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Song et al., 2020