Detail information of POPTR_0014s02480_circ_ag.7


General Information
CircRNA Name POPTR_0014s02480_circ_ag.7
ID in PlantcircBase pop_circ_003411
Alias Chr14:2124579-2129169
Organism Populus trichocarpa
Position chr14: 2073876-2078466  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   ag-circRNA
Identification method CIRI2; circRNA_finder
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing POPTR_0014s02480_circ_ag.1 POPTR_0014s02480_circ_ag.2 POPTR_0014s02480_circ_ag.3 POPTR_0014s02480_circ_ag.4 POPTR_0014s02480_circ_ag.5 POPTR_0014s02480_circ_ag.6 POPTR_0014s02480_circ_ag.8 POPTR_0014s02480_circ_ag.9
Support reads 4,3,2,3,2,5
Tissues leaf; cambium; xylem
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTTCGTATTGAATTTCTATCTTAAGCAACATGGCTGTGACTCTGCAGGACCCGACTGAGTACA
GGAGAAGGGTGCGCCAACAAGCCAAGCAATATCCACcctgcgctctgatgcaatggttgcttca
ccatgtcagcaacttattagctagattccatcatatatgtccaaacctcctttaagtaacagag
tgatttag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGCGCTCTGATGCAATGGTTGCTTCACCATGTCAGCAACTTATTAGCTAGATTCCATCATAT
ATGTCCAAACCTCCTTTAAGTAACAGAGTGATTTAGTGTTGGTACTAGACTACGAGTTAATTGT
CAAGTAGCTACGCTTCCCATTTCTGCACCAGAGGTTTAGCAACATGACAACTTTTGGATATAAA
ACCTATATCGATTGCCCATTAAGTTTGTTATTTATACCTATGGCGAAGCAGCATGATATACTGG
AAATTGGCTGTATGGGAAACCATGACTGATACTTCTGAATTTGGTTAAAGCAAGTGTAAGCTTT
TGAACAACTTTATCGGATGCTATGTTATATATGAGAGCGTGTATGATCTGTATCACATACTCGT
TTTTTCACCTTTTTATGTGTTTCAAGCATGCAATAACACTGAATAATACTATTGGAGTTAGACG
TCAGTGTAGGTTCATGCGAATCTAGGGAAGTAAATAGACCGAATAGAGTGGTTTTCGGAGATGG
TTTTTGTCCTTAGGATGGCCATCAGTGAAGAATGCTGCAGCCGCTGCTGAAGCATTGTTTTGAG
TAAGATGGCCTCCAATATTTTATGCATTTCATGACATAGATTCACAATTGTTTAAAGCTATCAC
GCTGTATTTATTGAACTGTACTGCAGGACTCTTTAATTCTTCTGAGCACATTTTGACACAAATG
TGTTGTCCAATATTCATACAAGATTAAGATAAGATGGCCTGGAATAAATTTTATTTTGTAGTGA
CTGCAAGTGTGTGTGAAGCATAACTGGGTCATTGATATTTGTTAAAAAGGTATGCAGAGGACCT
TACTTTCTTTTCTCCAGTGACTGCCATTGCGCCGAAGAGTGATTCACCTTGATCCCCCCTGTTC
TGTTGCGTTTTTGTACGCTCTAATGTCCTCATTCGTATCTACCTATCAATGGTGATTCTTCATT
TGCCCACACTTTCCGAGTCTAGTTGCCAACCGGCATTCCAAATTTAAGCACCTGAGTTATCAGC
TTCTCATTGTAAAATTGCTCTGCAAAAACTGGCCATGTGACAATGTGTACACAACACATATGCA
GAGTTCCAGCCGCAGGGAGTAAATAACTCTCCCAATCCCAACTGTTGGATTGTCCATTATTTGC
ACCTGCGGGGGCAATACCTTTATAACGAATCCTTCTGCCACTTTTCTTCAATTCATCCTCGTAT
TCTTCTGGCAGCCACCAGTCTTCCTGCTGATACAGGTTGTTGTTATCTTCTGTCAGATTTCAGG
ATTTTTCCTACATCCCAATTGAAAGACTGCCTTGAATCTTCAAGTGCACTAGCAATTTCTGATA
TTTGACTCTTGCTGAATCTGATGAGGCTTCCAAAACAAATGCAGAGAACGGACTTTGGTTTCTT
AGAATCCAGCCAATGCAGGCAACTGTGTTTACACATTGAAGCCTTGTCACCTCTTTCTAGCCTA
TCATCTGCATTTCTATTGAACAGAGATACGGGACCCGAGCCATGCTTTTATTCCAGTAACTTTT
CTGAAATGATCAACACAGGCTAGCTCTTCCTTTCAGCCTTCTTCAGTTCATCAAACAAAGAAGA
GAGAACTTCGTTGTCAGGGACAAGTGATTCTGTCTCAGATGCGACATTGCCGTGAGGTTGACAA
TAATCAATGCTGTTTGCAACACCAAGATTGAAGAATCCACTGCCACTAAAGGCAAGCCTTGGTA
TGCCAAGCTCAATGGCAACATCAACAGTCCATGGAAACTGACAATCAGAGGCAGTGCAAGATCG
TTTTAACCTGTGGTTGCAGCAACTCTATTCCATGAAATAATTTTAAAGCCATTTTCGGGGCCCC
TGTGGAGGATAAATGTTCACAGCCTTCAGGCAAACCAGCTTTTTTAGCACGGCAATCTGTATGA
TATGATCAGCAGGGATGTTCACACTTCACAGTATAAACCATATTTTCGCTCCTTTAACTTACAA
ATGTTTCATAATATAATTTAAAATTTCTCAATATCTACCTTCTAATTTTGCAAAAAAATCCAAC
TTTTAATCCCAATTCTAGATACCTGAGGCTATTTTATGCAAATAAGGTATTTTGGTGCACCACA
GTTTATTATCTTAAAATAGAAGAAATAGAGACAATAAGATAATGAGAAAAAAATATATTTGGTT
GAATAAACTTAGATAGAAATATAAAATAAATCTTTAGAAGGGATTTATGTAATTTTAAAATAAA
AAATACAAAAAAAAACATGTCTAATCTATCTCAATTATTTTCATCTTTTCTATCATTTTTAGCG
ATTAAACAGTCTCCCGAGAAAGTAATGAATGTTGCCATGAAGATTCCACATCAGAAGAATCTCT
GTTTTAAAAAATAATAATAATAAGGGATAATTATAAAAATTCTCTTATAATTTTATCTGAATTT
TACTTTTTCTCTATATTTTCATAAATTATATTTTTTATCCTATAGTTTATATGTTTAGTAACAA
TTTACATCTTTAACAATGGACTTGTTTAAAAAAGTTTATATGATTCAGTGTAATTTATAAAAAT
ATAAAAAACAAGTAAAATTTAAATAAAAAGTTTTTGTAATTATTCTTAATAATAATTAATGTCC
AAAACTCGCCTGACAAATTGTGGGCTTTTCTAAATTTGGTAGAGAGGCCCACTGCTGATCAATC
GTCCCAAAAGTCAAAACCAATTTCATTTTATTTGCAAGCTATGAATGAAGAGTCGGTCATTTGG
TCTCTTCCAAGTCCGAGTAAAAAACACTCCAAATCATCCATCATCCAGAAAACAAGGTAGTCCC
TGCAGAGACATAGAGCGTGAGAGATCATGTCAGGAGGAGGCATAGCTCGTGGTCGTCTTGCTGA
AGAGAGAAAGTCATGGCGTAAGAATCATCCCCACGTAAGTTCTCTTTTCTTCCATTTTTGCCCC
TCTTTAGCATCTATTTATCCATCTATCTTGTCTTCAATTGGGTCTTATTTTTGTGAATTTTCGG
TTTAGGGTTTTGTGGCTAAGCCTGATAATGCACAAGATGGTTCTCTTGATTTGATGGTGTGGAA
GTGCATCATACCTGGCAAACCCGGGGTTTGTAATTTTTTCTATCTCTCTCTGTGGCTTTTTTTT
TTTAATTATTATTATAGATTTACACGGTTTTATTTCTGATTTTCATCAACTGATATGATTTATT
TTATTTTTTACTGTAATTAGTCTTGATTAGCGAAAGGGTAGTTGAGATTGGTGGGATAATATAG
GATTAATGACCGTGGATAATAAAAAAAGTTGAAGTCAACGTATTATTTGGTAGGTGGAAGGCTT
ATGTGTTAGGAAATTGGTGTCATAGTGTGAAATTTTGTGAACATTTGTTTTTGTTGCTGCCCGA
ATAAATAATCTCTTTAGGATGTCTTTGGGTTTGAAAGAAGTGTTTTCTTGCTCTGGTTCTATAG
GAGTATCTCACTCGATTTTTGTTTTGTTTTTGGTTTACGGGAAGGGGTTTCTTCATATGTGATG
GGAGTGGCAATGCCTTGATGGTCCTTTTTGTATTCCTTCTCATTCCTTTCAAGGCCCCAAGCCG
CCAAACTTCGAGCTTAGAAATGCCATTCATGTCAGCGTCCCTTTTGGTAATGGACAGTTCTATG
CAGCATAAGGCCACTGTACTTTTTAGCATTTACTACAAGTTTGAAAAATGAATCTTAATATGCC
ACATTAGAAGTTGATCCTTTTAAAATATTTTCGAGATCCTCAGAGATTGAGATGTTGTATAGGA
TTGGAAAATATGTAAGGACCTAAGAAGTGGGAGATGTTTTGATGTGATAGCTCTTTTATTGTCA
ATTGGCATTGTTATTCTTTATGAGAGGACCTGAGTCGATTTTTCTTCTTTAACCCTTTTAAGTT
GCATTTGGTGCTCATTTGATTTATCTGCAGTTTGATATGTATCATTGTTGACCTCTTTACATTA
TCTTTCCACCCCCTCCTACAAAGAAAGAGAGAGCCGTTTCTAGTTTCTAGGTTATCAGGAAATG
CACATTCATAAAAGTCAGCATTACATGCTGTTTGCTCAACGATCTCATCTGAATGTTCATGTCC
TTAATGTGCACAGACAGATTGGGAGGGTGGCTTCTTCCCCCTCTCGCTTCATTTCAGTGAGGAC
TACCCAAGCAAACCTCCAAAGTGCAAGTTCCCCCAAGGTTTCTTCCACCCTAATGTCTACCCTT
CAGGAACTGTGTGCTTATCTATTCTCAATGAGGACTATGTAAGTAGTTGGCTCACTCTTTCATA
TTTCACATATTGCAAAACGCCCGGTTTCTAAAACTATTTTTTCTAGGGCTGGAGACCAGCCATT
ACTGTGAAGCAAATTTTAGTTGGCATTCAGGATTTGCTTGATCAACCAAATCCTTCTGATCCTG
CGCAAACTGATGGCTATCAGCTTTTTGTCCAGGTTTTTTATTTCAACATCTCAATCATCAGCTT
TGATTTGATTGGTTTCGTATTGAATTTCTATCTTAAGCAACATGGCTGTGACTCTGCAGGACCC
GACTGAGTACAGGAGAAGGGTGCGCCAACAAGCCAAGCAATATCCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.104157783
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Song et al., 2020