Detail information of POPTR_0014s02480_circ_ag.2


General Information
CircRNA Name POPTR_0014s02480_circ_ag.2
ID in PlantcircBase pop_circ_003406
Alias Chr14:2123023|2127587
Organism Populus trichocarpa
Position chr14: 2072320-2076884  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing POPTR_0014s02480_circ_ag.1 POPTR_0014s02480_circ_ag.3 POPTR_0014s02480_circ_ag.4 POPTR_0014s02480_circ_ag.5 POPTR_0014s02480_circ_ag.6 POPTR_0014s02480_circ_ag.7 POPTR_0014s02480_circ_ag.8 POPTR_0014s02480_circ_ag.9
Support reads NA
Tissues stem cambium
Exon boundary   NA-NA
Splicing signals   TT-GG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCACGTAAGTTCTCTTTTCTTCCATTTTTGCCCCTCTTTAGCATCTATTTATCCATCTATCTT
GTCTTCAATTGGGTCTTATTTTTGTGAATTTTCGGTttagggttttgtggctaagcctgataat
gcacaagatggttctcttgatttgatggtgtggaagtgcatcatacctggcaaacccggggttt
gtaatttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTAGGGTTTTGTGGCTAAGCCTGATAATGCACAAGATGGTTCTCTTGATTTGATGGTGTGGAAG
TGCATCATACCTGGCAAACCCGGGGTTTGTAATTTTCTCTATCTCTTTCTCTGGCTTTTTTCTA
ATTATTATTATAGATTTACACGGTTTTATTTCTGATTTTCATCAACTGATATGATTTATTTTAT
TTTTTACTGTAATTAATCTCGATTAGCGAAAGGGTAGTTGAGATTATGGGATTAATGATTGCAT
GAGTGGGAACACATGAATTGTAAAAAAGTTTAAGTCAACGTGCTATTAGTAAATCGGTGCCTTA
GTTTGAGATTTTGCAAACCATTGTTTTTGTTGCTGCCCAAATAAATAAATTCTGTAGGTTATCT
TTGGGTTTGAAAGAAGTATTTTCTTGTTCTGGTTCGATAGAAGTATTGTGTAAGAGATTGGAAA
ATATGAAAGGACCTAAAAAGTGGGAGATGTTTTGATGTGATAGCTCTTGTATTGTGCAGATCAA
TTGGCATTTTTATTCTTTACGAGAGGACCTGAGTCATGATTTCTATTTTAACCTTTTTAAGTTG
CATTTGGTGTTGATTTGATTTATCTAGAGATTGATATACATCATTGTTTAGCTCTTTATTTTAT
TGTTAGAGAATAATATAAATCATATCTTGGGGTTTCACCTAATAGTTTAAGCTATTGAGTTGAG
ATGGTTTCTTGACATGGTATCAGAGCCTTGATGACCAAGCGGTCACGAATTCGAATCCCATCAT
CCCTATTTATTTGATAAAAATTAAGCACAAGGTAATGTGGGTCTGTGCAAGTTTTAAGCCCAAA
GAGCTTTCACTTGAGGGGATGTGTTAGAGAATAATATAAATCATATCTTGAGGCCTCACCTAAT
AGCCTAAACTATTGGGTTAAGATGGTTCCTTATATATACATCATCTTTCCCTCTTACATAGAAA
GAAAGCGCTGTTCCTAGATTCCAGGTGGTCAGGAAATGCATGTTCATAAAAGTCAGCATTGCAT
GTGGTTTACTCAACGATCTCATCTGAATGTTCATGTCCTTAATATGCGTAGACAGATTGGGAGG
GTGGCTTCTTCCCCCTCACGCTTCATTTTAGCGAGGACTACCCAAGCAAACCTCCAAAGTGCAA
GTTCCCCCCGGGTTTCTTCCATCCTAATGTCTACCCTTCTGGAACTGTGTGCTTATCTATCCTC
AATGAGGACTATGTAAGTAGTTGGCTCACTCTTTGATATGTTACATATTGCAAAACGCCCAGTT
TCTAAAACTCTTTTTTCTAGGGCTGGAGACCAGCCATAACTGTGAAGCAAATTTTAGTTGGCAT
TCAGGATTTGCTTGATCAACCAAATCCTGCTGATCCTGCGCAAACTGATGGCTACCAGCTTTTT
GTCCAGGTTTTTGATCTCTATATCTCAATCGTCAGCTTTGATTTGATTGGTTTTGTATTGAATT
TCTATCTTAAGCAACATGGCCGTGTCTTTGCAGGACCCGACTGAGTACAGGAGAAAGGTGCGCC
AACAAGCCAAGCAATATCCACCTGCGCTCTGATGCAATGGTTGCTTCACCATGTCAGCAACTTA
TTAGCTAGATTCCATCATATATGTCCAAACCTCCTTTAAGTAACAGAGTGATTTAGTGTTGGTA
CTAGACTACGAGTTAATTGTCAAGTAGCTACGCTTCCCATTTCTGCACCAGAGGTTTAGCAACA
TGACAACTTTTGGATATAAAACCTATATCGATTGCCCATTAAGTTTGTTATTTATACCTATGGC
GAAGCAGCATGATATACTGGAAATTGGCTGTATGGGAAACCATGACTGATACTTCTGAATTTGG
TTAAAGCAAGTGTAAGCTTTTGAACAACTTTATCGGATGCTATGTTATATATGAGAGCGTGTAT
GATCTGTATCACATACTCGTTTTTTCACCTTTTTATGTGTTTCAAGCATGCAATAACACTGAAT
AATACTATTGGAGTTAGACGTCAGTGTAGGTTCATGCGAATCTAGGGAAGTAAATAGACCGAAT
AGAGTGGTTTTCGGAGATGGTTTTTGTCCTTAGGATGGCCATCAGTGAAGAATGCTGCAGCCGC
TGCTGAAGCATTGTTTTGAGTAAGATGGCCTCCAATATTTTATGCATTTCATGACATAGATTCA
CAATTGTTTAAAGCTATCACGCTGTATTTATTGAACTGTACTGCAGGACTCTTTAATTCTTCTG
AGCACATTTTGACACAAATGTGTTGTCCAATATTCATACAAGATTAAGATAAGATGGCCTGGAA
TAAATTTTATTTTGTAGTGACTGCAAGTGTGTGTGAAGCATAACTGGGTCATTGATATTTGTTA
AAAAGGTATGCAGAGGACCTTACTTTCTTTTCTCCAGTGACTGCCATTGCGCCGAAGAGTGATT
CACCTTGATCCCCCCTGTTCTGTTGCGTTTTTGTACGCTCTAATGTCCTCATTCGTATCTACCT
ATCAATGGTGATTCTTCATTTGCCCACACTTTCCGAGTCTAGTTGCCAACCGGCATTCCAAATT
TAAGCACCTGAGTTATCAGCTTCTCATTGTAAAATTGCTCTGCAAAAACTGGCCATGTGACAAT
GTGTACACAACACATATGCAGAGTTCCAGCCGCAGGGAGTAAATAACTCTCCCAATCCCAACTG
TTGGATTGTCCATTATTTGCACCTGCGGGGGCAATACCTTTATAACGAATCCTTCTGCCACTTT
TCTTCAATTCATCCTCGTATTCTTCTGGCAGCCACCAGTCTTCCTGCTGATACAGGTTGTTGTT
ATCTTCTGTCAGATTTCAGGATTTTTCCTACATCCCAATTGAAAGACTGCCTTGAATCTTCAAG
TGCACTAGCAATTTCTGATATTTGACTCTTGCTGAATCTGATGAGGCTTCCAAAACAAATGCAG
AGAACGGACTTTGGTTTCTTAGAATCCAGCCAATGCAGGCAACTGTGTTTACACATTGAAGCCT
TGTCACCTCTTTCTAGCCTATCATCTGCATTTCTATTGAACAGAGATACGGGACCCGAGCCATG
CTTTTATTCCAGTAACTTTTCTGAAATGATCAACACAGGCTAGCTCTTCCTTTCAGCCTTCTTC
AGTTCATCAAACAAAGAAGAGAGAACTTCGTTGTCAGGGACAAGTGATTCTGTCTCAGATGCGA
CATTGCCGTGAGGTTGACAATAATCAATGCTGTTTGCAACACCAAGATTGAAGAATCCACTGCC
ACTAAAGGCAAGCCTTGGTATGCCAAGCTCAATGGCAACATCAACAGTCCATGGAAACTGACAA
TCAGAGGCAGTGCAAGATCGTTTTAACCTGTGGTTGCAGCAACTCTATTCCATGAAATAATTTT
AAAGCCATTTTCGGGGCCCCTGTGGAGGATAAATGTTCACAGCCTTCAGGCAAACCAGCTTTTT
TAGCACGGCAATCTGTATGATATGATCAGCAGGGATGTTCACACTTCACAGTATAAACCATATT
TTCGCTCCTTTAACTTACAAATGTTTCATAATATAATTTAAAATTTCTCAATATCTACCTTCTA
ATTTTGCAAAAAAATCCAACTTTTAATCCCAATTCTAGATACCTGAGGCTATTTTATGCAAATA
AGGTATTTTGGTGCACCACAGTTTATTATCTTAAAATAGAAGAAATAGAGACAATAAGATAATG
AGAAAAAAATATATTTGGTTGAATAAACTTAGATAGAAATATAAAATAAATCTTTAGAAGGGAT
TTATGTAATTTTAAAATAAAAAATACAAAAAAAAACATGTCTAATCTATCTCAATTATTTTCAT
CTTTTCTATCATTTTTAGCGATTAAACAGTCTCCCGAGAAAGTAATGAATGTTGCCATGAAGAT
TCCACATCAGAAGAATCTCTGTTTTAAAAAATAATAATAATAAGGGATAATTATAAAAATTCTC
TTATAATTTTATCTGAATTTTACTTTTTCTCTATATTTTCATAAATTATATTTTTTATCCTATA
GTTTATATGTTTAGTAACAATTTACATCTTTAACAATGGACTTGTTTAAAAAAGTTTATATGAT
TCAGTGTAATTTATAAAAATATAAAAAACAAGTAAAATTTAAATAAAAAGTTTTTGTAATTATT
CTTAATAATAATTAATGTCCAAAACTCGCCTGACAAATTGTGGGCTTTTCTAAATTTGGTAGAG
AGGCCCACTGCTGATCAATCGTCCCAAAAGTCAAAACCAATTTCATTTTATTTGCAAGCTATGA
ATGAAGAGTCGGTCATTTGGTCTCTTCCAAGTCCGAGTAAAAAACACTCCAAATCATCCATCAT
CCAGAAAACAAGGTAGTCCCTGCAGAGACATAGAGCGTGAGAGATCATGTCAGGAGGAGGCATA
GCTCGTGGTCGTCTTGCTGAAGAGAGAAAGTCATGGCGTAAGAATCATCCCCACGTAAGTTCTC
TTTTCTTCCATTTTTGCCCCTCTTTAGCATCTATTTATCCATCTATCTTGTCTTCAATTGGGTC
TTATTTTTGTGAATTTTCGGT
Conservation Information
Conserved circRNAs NA
PMCS 0.099771411
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zheng et al., 2020