Detail information of POPTR_0014s02480_circ_ag.8


General Information
CircRNA Name POPTR_0014s02480_circ_ag.8
ID in PlantcircBase pop_circ_003412
Alias Chr14:2124772-2129407
Organism Populus trichocarpa
Position chr14: 2074069-2078704  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   ag-circRNA
Identification method CIRI2; circRNA_finder
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing POPTR_0014s02480_circ_ag.1 POPTR_0014s02480_circ_ag.2 POPTR_0014s02480_circ_ag.3 POPTR_0014s02480_circ_ag.4 POPTR_0014s02480_circ_ag.5 POPTR_0014s02480_circ_ag.6 POPTR_0014s02480_circ_ag.7 POPTR_0014s02480_circ_ag.9
Support reads 3,2,5
Tissues leaf; cambium; xylem
Exon boundary   NA-NA
Splicing signals   CT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGCTTCCCATTTCTGTACCGGAGGGTGCTTTTTTAGTCATGCTTTGCCACATGTTCCTGCATT
GCAAGTTAGCAACATGACAACTTTTGGATATAAAACcctatatcgattgcccattaagtttgtt
atttatacctatggcgaagcagcatgatatactggaaattggctgtatgggaaaccatgactga
tacttctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTATATCGATTGCCCATTAAGTTTGTTATTTATACCTATGGCGAAGCAGCATGATATACTGGA
AATTGGCTGTATGGGAAACCATGACTGATACTTCTGAATTTGGTTAAAGCAAGTGTAAGCTTTT
GAACAACTTTATCGGATGCTATGTTATATATGAGAGCGTGTATGATCTGTATCACATACTCGTT
TTTTCACCTTTTTATGTGTTTCAAGCATGCAATAACACTGAATAATACTATTGGAGTTAGACGT
CAGTGTAGGTTCATGCGAATCTAGGGAAGTAAATAGACCGAATAGAGTGGTTTTCGGAGATGGT
TTTTGTCCTTAGGATGGCCATCAGTGAAGAATGCTGCAGCCGCTGCTGAAGCATTGTTTTGAGT
AAGATGGCCTCCAATATTTTATGCATTTCATGACATAGATTCACAATTGTTTAAAGCTATCACG
CTGTATTTATTGAACTGTACTGCAGGACTCTTTAATTCTTCTGAGCACATTTTGACACAAATGT
GTTGTCCAATATTCATACAAGATTAAGATAAGATGGCCTGGAATAAATTTTATTTTGTAGTGAC
TGCAAGTGTGTGTGAAGCATAACTGGGTCATTGATATTTGTTAAAAAGGTATGCAGAGGACCTT
ACTTTCTTTTCTCCAGTGACTGCCATTGCGCCGAAGAGTGATTCACCTTGATCCCCCCTGTTCT
GTTGCGTTTTTGTACGCTCTAATGTCCTCATTCGTATCTACCTATCAATGGTGATTCTTCATTT
GCCCACACTTTCCGAGTCTAGTTGCCAACCGGCATTCCAAATTTAAGCACCTGAGTTATCAGCT
TCTCATTGTAAAATTGCTCTGCAAAAACTGGCCATGTGACAATGTGTACACAACACATATGCAG
AGTTCCAGCCGCAGGGAGTAAATAACTCTCCCAATCCCAACTGTTGGATTGTCCATTATTTGCA
CCTGCGGGGGCAATACCTTTATAACGAATCCTTCTGCCACTTTTCTTCAATTCATCCTCGTATT
CTTCTGGCAGCCACCAGTCTTCCTGCTGATACAGGTTGTTGTTATCTTCTGTCAGATTTCAGGA
TTTTTCCTACATCCCAATTGAAAGACTGCCTTGAATCTTCAAGTGCACTAGCAATTTCTGATAT
TTGACTCTTGCTGAATCTGATGAGGCTTCCAAAACAAATGCAGAGAACGGACTTTGGTTTCTTA
GAATCCAGCCAATGCAGGCAACTGTGTTTACACATTGAAGCCTTGTCACCTCTTTCTAGCCTAT
CATCTGCATTTCTATTGAACAGAGATACGGGACCCGAGCCATGCTTTTATTCCAGTAACTTTTC
TGAAATGATCAACACAGGCTAGCTCTTCCTTTCAGCCTTCTTCAGTTCATCAAACAAAGAAGAG
AGAACTTCGTTGTCAGGGACAAGTGATTCTGTCTCAGATGCGACATTGCCGTGAGGTTGACAAT
AATCAATGCTGTTTGCAACACCAAGATTGAAGAATCCACTGCCACTAAAGGCAAGCCTTGGTAT
GCCAAGCTCAATGGCAACATCAACAGTCCATGGAAACTGACAATCAGAGGCAGTGCAAGATCGT
TTTAACCTGTGGTTGCAGCAACTCTATTCCATGAAATAATTTTAAAGCCATTTTCGGGGCCCCT
GTGGAGGATAAATGTTCACAGCCTTCAGGCAAACCAGCTTTTTTAGCACGGCAATCTGTATGAT
ATGATCAGCAGGGATGTTCACACTTCACAGTATAAACCATATTTTCGCTCCTTTAACTTACAAA
TGTTTCATAATATAATTTAAAATTTCTCAATATCTACCTTCTAATTTTGCAAAAAAATCCAACT
TTTAATCCCAATTCTAGATACCTGAGGCTATTTTATGCAAATAAGGTATTTTGGTGCACCACAG
TTTATTATCTTAAAATAGAAGAAATAGAGACAATAAGATAATGAGAAAAAAATATATTTGGTTG
AATAAACTTAGATAGAAATATAAAATAAATCTTTAGAAGGGATTTATGTAATTTTAAAATAAAA
AATACAAAAAAAAACATGTCTAATCTATCTCAATTATTTTCATCTTTTCTATCATTTTTAGCGA
TTAAACAGTCTCCCGAGAAAGTAATGAATGTTGCCATGAAGATTCCACATCAGAAGAATCTCTG
TTTTAAAAAATAATAATAATAAGGGATAATTATAAAAATTCTCTTATAATTTTATCTGAATTTT
ACTTTTTCTCTATATTTTCATAAATTATATTTTTTATCCTATAGTTTATATGTTTAGTAACAAT
TTACATCTTTAACAATGGACTTGTTTAAAAAAGTTTATATGATTCAGTGTAATTTATAAAAATA
TAAAAAACAAGTAAAATTTAAATAAAAAGTTTTTGTAATTATTCTTAATAATAATTAATGTCCA
AAACTCGCCTGACAAATTGTGGGCTTTTCTAAATTTGGTAGAGAGGCCCACTGCTGATCAATCG
TCCCAAAAGTCAAAACCAATTTCATTTTATTTGCAAGCTATGAATGAAGAGTCGGTCATTTGGT
CTCTTCCAAGTCCGAGTAAAAAACACTCCAAATCATCCATCATCCAGAAAACAAGGTAGTCCCT
GCAGAGACATAGAGCGTGAGAGATCATGTCAGGAGGAGGCATAGCTCGTGGTCGTCTTGCTGAA
GAGAGAAAGTCATGGCGTAAGAATCATCCCCACGTAAGTTCTCTTTTCTTCCATTTTTGCCCCT
CTTTAGCATCTATTTATCCATCTATCTTGTCTTCAATTGGGTCTTATTTTTGTGAATTTTCGGT
TTAGGGTTTTGTGGCTAAGCCTGATAATGCACAAGATGGTTCTCTTGATTTGATGGTGTGGAAG
TGCATCATACCTGGCAAACCCGGGGTTTGTAATTTTTTCTATCTCTCTCTGTGGCTTTTTTTTT
TTAATTATTATTATAGATTTACACGGTTTTATTTCTGATTTTCATCAACTGATATGATTTATTT
TATTTTTTACTGTAATTAGTCTTGATTAGCGAAAGGGTAGTTGAGATTGGTGGGATAATATAGG
ATTAATGACCGTGGATAATAAAAAAAGTTGAAGTCAACGTATTATTTGGTAGGTGGAAGGCTTA
TGTGTTAGGAAATTGGTGTCATAGTGTGAAATTTTGTGAACATTTGTTTTTGTTGCTGCCCGAA
TAAATAATCTCTTTAGGATGTCTTTGGGTTTGAAAGAAGTGTTTTCTTGCTCTGGTTCTATAGG
AGTATCTCACTCGATTTTTGTTTTGTTTTTGGTTTACGGGAAGGGGTTTCTTCATATGTGATGG
GAGTGGCAATGCCTTGATGGTCCTTTTTGTATTCCTTCTCATTCCTTTCAAGGCCCCAAGCCGC
CAAACTTCGAGCTTAGAAATGCCATTCATGTCAGCGTCCCTTTTGGTAATGGACAGTTCTATGC
AGCATAAGGCCACTGTACTTTTTAGCATTTACTACAAGTTTGAAAAATGAATCTTAATATGCCA
CATTAGAAGTTGATCCTTTTAAAATATTTTCGAGATCCTCAGAGATTGAGATGTTGTATAGGAT
TGGAAAATATGTAAGGACCTAAGAAGTGGGAGATGTTTTGATGTGATAGCTCTTTTATTGTCAA
TTGGCATTGTTATTCTTTATGAGAGGACCTGAGTCGATTTTTCTTCTTTAACCCTTTTAAGTTG
CATTTGGTGCTCATTTGATTTATCTGCAGTTTGATATGTATCATTGTTGACCTCTTTACATTAT
CTTTCCACCCCCTCCTACAAAGAAAGAGAGAGCCGTTTCTAGTTTCTAGGTTATCAGGAAATGC
ACATTCATAAAAGTCAGCATTACATGCTGTTTGCTCAACGATCTCATCTGAATGTTCATGTCCT
TAATGTGCACAGACAGATTGGGAGGGTGGCTTCTTCCCCCTCTCGCTTCATTTCAGTGAGGACT
ACCCAAGCAAACCTCCAAAGTGCAAGTTCCCCCAAGGTTTCTTCCACCCTAATGTCTACCCTTC
AGGAACTGTGTGCTTATCTATTCTCAATGAGGACTATGTAAGTAGTTGGCTCACTCTTTCATAT
TTCACATATTGCAAAACGCCCGGTTTCTAAAACTATTTTTTCTAGGGCTGGAGACCAGCCATTA
CTGTGAAGCAAATTTTAGTTGGCATTCAGGATTTGCTTGATCAACCAAATCCTTCTGATCCTGC
GCAAACTGATGGCTATCAGCTTTTTGTCCAGGTTTTTTATTTCAACATCTCAATCATCAGCTTT
GATTTGATTGGTTTCGTATTGAATTTCTATCTTAAGCAACATGGCTGTGACTCTGCAGGACCCG
ACTGAGTACAGGAGAAGGGTGCGCCAACAAGCCAAGCAATATCCACCTGCGCTCTGATGCAATG
GCTGCTTCACCATGTCTGCAACATATTAGTTAGATTCCGTCATATATGTCCAAACCTCGTTTAA
GTAACAGAGTGATTTAGTGTTGCTACTTGACTGCTAGTTAATTGTCAATTGCAGCTATGCTTCC
CATTTCTGTACCGGAGGGTGCTTTTTTAGTCATGCTTTGCCACATGTTCCTGCATTGCAAGTTA
GCAACATGACAACTTTTGGATATAAAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.103955486
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Song et al., 2020