Detail information of 1_circ_ag.11


General Information
CircRNA Name 1_circ_ag.11
ID in PlantcircBase ath_circ_010492
Alias At_ciR2758
Organism Arabidpsis thaliana
Position chr1: 28715783-28718696  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.2 1_circ_ag.3 AT1G75920_circ_g.1 1_circ_ag.2 AT1G75940_circ_g.1 AT1G75940_circ_g.2 AT1G75940_circ_g.3 AT1G75940_circ_g.4 AT1G75940_circ_g.5 AT1G75950_circ_g.1 AT1G76010_circ_g.1 AT1G76010_circ_g.2 AT1G76010_circ_g.3 AT1G76010_circ_g.4 AT1G76010_circ_g.5 AT1G76010_circ_g.6 AT1G76010_circ_g.7 AT1G76010_circ_g.8 AT1G76010_circ_g.9 AT1G76010_circ_g.10 AT1G76010_circ_g.11 AT1G76020_circ_g.1 AT1G76030_circ_g.1 AT1G76030_circ_g.2 AT1G76030_circ_g.3 AT1G76030_circ_g.4 AT1G76030_circ_g.5 AT1G76030_circ_g.6 AT1G76030_circ_g.7 AT1G76040_circ_g.1 AT1G76040_circ_g.2 AT1G76050_circ_g.1 AT1G76050_circ_g.2 AT1G76050_circ_g.3 AT1G76050_circ_g.4 AT1G76060_circ_g.1 AT1G76090_circ_g.1 AT1G76090_circ_g.2 AT1G76100_circ_g.1 AT1G76100_circ_g.2 AT1G76110_circ_g.1 AT1G76130_circ_g.1 AT1G76130_circ_g.2 AT1G76140_circ_g.1 AT1G76140_circ_g.2 AT1G76150_circ_g.1 AT1G76150_circ_g.2 AT1G76150_circ_g.3 AT1G76160_circ_g.1 AT1G76160_circ_g.2 AT1G76160_circ_g.3 AT1G76160_circ_g.4 AT1G76180_circ_g.1 AT1G76180_circ_g.2 AT1G76180_circ_g.3 AT1G76180_circ_g.4 AT1G76180_circ_g.5 AT1G76180_circ_g.6 AT1G76180_circ_g.7 AT1G76180_circ_g.8 AT1G76180_circ_g.9 AT1G76180_circ_g.10 AT1G76180_circ_g.11 AT1G76180_circ_g.12 AT1G76180_circ_g.13 AT1G76180_circ_g.14 AT1G76180_circ_g.15 AT1G76180_circ_g.16 AT1G76180_circ_g.17 AT1G76180_circ_g.18 AT1G76180_circ_g.19 AT1G76180_circ_g.20 AT1G76180_circ_g.21 AT1G76180_circ_g.22 AT1G76180_circ_g.23 AT1G76180_circ_g.24 AT1G76180_circ_g.25 AT1G76180_circ_g.26 AT1G76180_circ_g.27 AT1G76180_circ_g.28 AT1G76180_circ_g.29 AT1G76180_circ_g.30 AT1G76260_circ_g.1 AT1G76270_circ_g.1 AT1G76280_circ_g.1 AT1G76280_circ_g.2 AT1G76280_circ_g.3 AT1G76280_circ_g.4 AT1G76280_circ_g.5 AT1G76310_circ_g.1 AT1G76310_circ_g.2 AT1G76320_circ_g.1 AT1G76350_circ_g.1 AT1G76350_circ_g.2 AT1G76380_circ_g.1 AT1G76380_circ_g.2 AT1G76380_circ_g.3 AT1G76380_circ_g.4 AT1G76400_circ_g.1 AT1G76400_circ_g.2 AT1G76405_circ_g.1 AT1G76450_circ_g.1 AT1G76450_circ_g.2 AT1G76450_circ_g.3 AT1G76450_circ_g.4 AT1G76450_circ_g.5 AT1G76460_circ_g.1 AT1G76460_circ_g.2 AT1G76470_circ_g.1 AT1G76490_circ_g.1 AT1G76490_circ_g.2 AT1G76490_circ_g.3 AT1G76490_circ_g.4 AT1G76510_circ_g.1 AT1G76510_circ_g.2 AT1G76510_circ_g.3 AT1G76510_circ_g.4 AT1G76510_circ_g.5 AT1G76510_circ_g.6 AT1G76510_circ_g.7 AT1G76510_circ_g.8 AT1G76510_circ_g.9 AT1G76510_circ_g.10 AT1G76520_circ_g.1 AT1G76520_circ_g.2 1_circ_ag.3 AT1G76530_circ_g.1 AT1G76540_circ_g.1 AT1G76540_circ_g.2 AT1G76540_circ_g.3 AT1G76550_circ_g.1 AT1G76550_circ_g.2 AT1G76580_circ_g.1 AT1G76580_circ_g.2 AT1G76580_circ_g.3 AT1G76580_circ_g.4 AT1G76590_circ_g.1 AT1G76620_circ_g.1 AT1G76620_circ_g.2 AT1G76630_circ_g.1 AT1G76630_circ_g.2 AT1G76630_circ_g.3 AT1G76660_circ_g.1 AT1G76660_circ_g.2 AT1G76670_circ_g.1 AT1G76670_circ_g.2 AT1G76670_circ_g.3 1_circ_ag.4 AT1G76680_circ_g.1 1_circ_ag.2 1_circ_ag.3 1_circ_ag.4 AT1G76680_circ_g.5 AT1G76700_circ_g.1 1_circ_ag.2 AT1G76700_circ_g.3 AT1G76700_circ_g.4 AT1G76700_circ_g.5 1_circ_ag.6 1_circ_ag.7 1_circ_ag.8 AT1G76790_circ_g.1 AT1G76790_circ_g.2 AT1G76790_circ_g.3 AT1G76810_circ_g.1 AT1G76810_circ_g.2
Support reads 3/5
Tissues leaf/root, aerial, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTCTTTTGTTTGTGTATAGATTGTCTTCTATGTGTTTAGTCCTTCGCTTATTGGAAGCCGCTT
AGCTGATAGTGTTACATATGAAAGCTTGGTCAAAATgtggttcatgccggtgaatgttctgctt
acattcatcattggttcattacttggctggattgttattgtcatcactaagcctccttcacacc
ttcgtggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGTTCATGCCGGTGAATGTTCTGCTTACATTCATCATTGGTTCATTACTTGGCTGGATTGTT
ATTGTCATCACTAAGCCTCCTTCACACCTTCGTGGTCTCATTCTTGGTTGTTGTGCTGCTGGTA
ACAAACCTTAACATGAATGTTTCTGATTTCAGAATCTGTTTAACTTGTGTTTTGCTTATGACTG
TGGTAATGAATGAAACAAAACAGGGAATTTGGGGAATATGCCACTGATTATAATCCCAGCTGTT
TGTAAAGAAAAAGGAGGTCCCTTTGGAGATCCTGAGAGTTGCCAGAAATATGGAATGGGTTATG
TTGCTCTCTCCATGGCTGTAAGTTCTTCTTCTTCTTCTTCTTTGTCTTCTTCTTCTTCAAGGTT
TTGTAATCAGTATGTCTCATGACAGTACTTGGTAACGTATCAGATGGGATCTATTTACATATGG
ACTTATGTATACAATCTTATGCGTGTGCTATCGAACTCTCCCGTTGAAACCCCTCCCTCTGTTG
AATCCAACTACGACAGCTACAAAGTTCCCCTTATTTCTTCCAAGGAAGAAGAAAACAACCAAAA
GGTTTCATCACATATGCACATGATCAGTAACTATTCATTTATCAAAGTTGGTAGTGACTGTGTG
TATATGACAGGCTGGGAGGTGGGAAAAAGTCAAGCGGAGATTGGTTTCACTGTCACAAAAAGTC
AACCTTAAGACAATTTTTGCTCCATCAACTATTGCTGCGGTTTGTGTTTCAATGGCTCTGTTTT
ATACATTTGAGACGTCACTCACACTAGTGTAATCTTTCTAATTACCCTTTTTGTTCTTCTGTTT
CCAGATGATTGCACTTGTGATCGGGCTCATTACTCCTTTAAGGAAGCTAATAATCGGCACGGAA
GCTCCTCTCCGGGTGCTTCAAGACTCAGTAACTCTAGTGGGGTAACTGCAGCTAAAATTAGACC
ATTATCTTAGCATTAGCTCAACAATGAATCATCTCTTGGAAAAACGTAACTCACTCATTCGAAA
GCTTCTTATGTGTCTTGTTTCTTTTGGCTGAAGAGATGGGGCAGTTCCTGCAATGACCATGATT
ATAGGAGGAAACCTACTCAAAGGTTTGAGGAGTTCAGGAATGAAAATGTCCAGTATTATCGGCG
TCTTGGTTGCGCGTTACGTTTTACTGCCTATGAGCGGTGTTTTAATCGTAAGAGGAGCATATAA
GTTGGATTTAGTTACATCAGAGCCCTTATACCAATTCGTTCTTCTTCTTCAATATGCTGTCCCA
CCAGCCATGAATCTAGGTTCATTGCTCTGAAACCAACTCTTTAAAAAATACAGTTACTTCTTTC
AGATAAGATCACTTCATTAGTTTCACTTACTCTTGCAGGTACAATTACTCAGTTATTTGGAACT
GGGGAGAGTGAATGCTCAGTGATTATGCTCTGGACTTACTCTTTGGCTTCGATTGCACTCACTG
TTTGGCCAACATTCTTCATGTGGCTTGTAGCTTAGAATAGACCCCCATACTCATCATGTTACAT
GTATTGTTTTGTTCCATTGATTCAAGAATTGTTCTTGGACTTCCAGATGATTGGATCAAGTATA
ATAGAGAACATATACTTATAAGTCTTTTGATACGAACTTTGGACTTACAGTCTGTAACTTACAG
ATAGAAGATCAAGTCCAGCCTCATCAAGAATCTGCTATTTTGATCCTCATTGTCTTGGGATCCA
TCAAGAGATTGTGAGGCTTAAAATCTCTGTTATGATACCCAAATCATTCTCTCTTGAAACAGGG
TAAAACCAGAGAACAATCTACTTGACTACTTGTGACTGTGGCCATGGCAGAAAGCTATTCCTTT
GTTTAGTTTGGTACACCTGAGAAAAATTTCAGATTGTTACATTTGGTTTAATAGACTATTACAT
ATCAGTCAAGTGAGTACAAATGATGAGAGAAAAGAGTGGTGACAAAAAGCTCTAATTGGTGGAT
TTTGTGATAAATTTCTTTACATCTGTGTCCATGTATCTCAAACCTAATCGTACTCTAAGATCAA
TTAATGTCTCATCACGTCATATTTGAGATTTTGATGTATAACCTTCCACATCAGGGCTAAAGTG
CATGCTAGACTCCAAGATATACTATATGTAATATATAAATTTGTAGCTAGTGAAACTGTGGAAA
AACAAAAATTATAGTACTGAAACATTTTAGTTTATGAAACGATTCTTCAGAAAATAGATGACAA
CAACAGAAGTTTTTTTAAAATCAACGTTATTGTTCTTTACCATACGGTAAACACAATGCGACAT
ATCCACATCTTCAGCAAGAACCACAAAGTAACATGGCACGTTTCCTAGTCGCTGTGACTAAAGG
CATGACGATGGTTCCCTTATAATTTGTATTCTTTTTTTCTCAGATAAAGAGTTGGTGGTTATGA
TACGTTGGTTTTTTCATACGGAACAAAAATAATACTTACTCTATATCTCTCCTTCACTCTTCCT
CTAAAAAGGTAACTATACCATTTCATTTGATTTCTCCATAAGTTATCGTCGTTTGGTTCATTGT
TTCTTTATCTCAAATCATGTAATATATGGATTAAGTTTGCAGATTCTAACTTTTGGAAGTAGAG
ATGAAGCTTTTGGAGTTGTTCATAGCTTCATCGAAACCAGTTGTGGAGACTTTGTTGATAACAT
CAGTTGGATTTTATTTGGCTCTCGACACAGTCAATCTTCTTGGTCATGATGCTCGCAAACATTT
GAACAACGTCCGTTTTTTAACTCTCTTCTTTAACAAATAATCTAAAAGAGTTAACTTAAATTTC
TCTTTTGTTTGTGTATAGATTGTCTTCTATGTGTTTAGTCCTTCGCTTATTGGAAGCCGCTTAG
CTGATAGTGTTACATATGAAAGCTTGGTCAAAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.674597691
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR5021
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017