Detail information of 1_circ_ag.3


General Information
CircRNA Name 1_circ_ag.3
ID in PlantcircBase ath_circ_010495
Alias At_ciR556
Organism Arabidpsis thaliana
Position chr1: 28717165-28720068  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.2 1_circ_ag.3 AT1G75920_circ_g.1 1_circ_ag.2 AT1G75940_circ_g.1 AT1G75940_circ_g.2 AT1G75940_circ_g.3 AT1G75940_circ_g.4 AT1G75940_circ_g.5 AT1G75950_circ_g.1 AT1G76010_circ_g.1 AT1G76010_circ_g.2 AT1G76010_circ_g.3 AT1G76010_circ_g.4 AT1G76010_circ_g.5 AT1G76010_circ_g.6 AT1G76010_circ_g.7 AT1G76010_circ_g.8 AT1G76010_circ_g.9 AT1G76010_circ_g.10 AT1G76010_circ_g.11 AT1G76020_circ_g.1 AT1G76030_circ_g.1 AT1G76030_circ_g.2 AT1G76030_circ_g.3 AT1G76030_circ_g.4 AT1G76030_circ_g.5 AT1G76030_circ_g.6 AT1G76030_circ_g.7 AT1G76040_circ_g.1 AT1G76040_circ_g.2 AT1G76050_circ_g.1 AT1G76050_circ_g.2 AT1G76050_circ_g.3 AT1G76050_circ_g.4 AT1G76060_circ_g.1 AT1G76090_circ_g.1 AT1G76090_circ_g.2 AT1G76100_circ_g.1 AT1G76100_circ_g.2 AT1G76110_circ_g.1 AT1G76130_circ_g.1 AT1G76130_circ_g.2 AT1G76140_circ_g.1 AT1G76140_circ_g.2 AT1G76150_circ_g.1 AT1G76150_circ_g.2 AT1G76150_circ_g.3 AT1G76160_circ_g.1 AT1G76160_circ_g.2 AT1G76160_circ_g.3 AT1G76160_circ_g.4 AT1G76180_circ_g.1 AT1G76180_circ_g.2 AT1G76180_circ_g.3 AT1G76180_circ_g.4 AT1G76180_circ_g.5 AT1G76180_circ_g.6 AT1G76180_circ_g.7 AT1G76180_circ_g.8 AT1G76180_circ_g.9 AT1G76180_circ_g.10 AT1G76180_circ_g.11 AT1G76180_circ_g.12 AT1G76180_circ_g.13 AT1G76180_circ_g.14 AT1G76180_circ_g.15 AT1G76180_circ_g.16 AT1G76180_circ_g.17 AT1G76180_circ_g.18 AT1G76180_circ_g.19 AT1G76180_circ_g.20 AT1G76180_circ_g.21 AT1G76180_circ_g.22 AT1G76180_circ_g.23 AT1G76180_circ_g.24 AT1G76180_circ_g.25 AT1G76180_circ_g.26 AT1G76180_circ_g.27 AT1G76180_circ_g.28 AT1G76180_circ_g.29 AT1G76180_circ_g.30 AT1G76260_circ_g.1 AT1G76270_circ_g.1 AT1G76280_circ_g.1 AT1G76280_circ_g.2 AT1G76280_circ_g.3 AT1G76280_circ_g.4 AT1G76280_circ_g.5 AT1G76310_circ_g.1 AT1G76310_circ_g.2 AT1G76320_circ_g.1 AT1G76350_circ_g.1 AT1G76350_circ_g.2 AT1G76380_circ_g.1 AT1G76380_circ_g.2 AT1G76380_circ_g.3 AT1G76380_circ_g.4 AT1G76400_circ_g.1 AT1G76400_circ_g.2 AT1G76405_circ_g.1 AT1G76450_circ_g.1 AT1G76450_circ_g.2 AT1G76450_circ_g.3 AT1G76450_circ_g.4 AT1G76450_circ_g.5 AT1G76460_circ_g.1 AT1G76460_circ_g.2 AT1G76470_circ_g.1 AT1G76490_circ_g.1 AT1G76490_circ_g.2 AT1G76490_circ_g.3 AT1G76490_circ_g.4 AT1G76510_circ_g.1 AT1G76510_circ_g.2 AT1G76510_circ_g.3 AT1G76510_circ_g.4 AT1G76510_circ_g.5 AT1G76510_circ_g.6 AT1G76510_circ_g.7 AT1G76510_circ_g.8 AT1G76510_circ_g.9 AT1G76510_circ_g.10 1_circ_ag.11 AT1G76520_circ_g.1 AT1G76520_circ_g.2 AT1G76530_circ_g.1 AT1G76540_circ_g.1 AT1G76540_circ_g.2 AT1G76540_circ_g.3 AT1G76550_circ_g.1 AT1G76550_circ_g.2 AT1G76580_circ_g.1 AT1G76580_circ_g.2 AT1G76580_circ_g.3 AT1G76580_circ_g.4 AT1G76590_circ_g.1 AT1G76620_circ_g.1 AT1G76620_circ_g.2 AT1G76630_circ_g.1 AT1G76630_circ_g.2 AT1G76630_circ_g.3 AT1G76660_circ_g.1 AT1G76660_circ_g.2 AT1G76670_circ_g.1 AT1G76670_circ_g.2 AT1G76670_circ_g.3 1_circ_ag.4 AT1G76680_circ_g.1 1_circ_ag.2 1_circ_ag.3 1_circ_ag.4 AT1G76680_circ_g.5 AT1G76700_circ_g.1 1_circ_ag.2 AT1G76700_circ_g.3 AT1G76700_circ_g.4 AT1G76700_circ_g.5 1_circ_ag.6 1_circ_ag.7 1_circ_ag.8 AT1G76790_circ_g.1 AT1G76790_circ_g.2 AT1G76790_circ_g.3 AT1G76810_circ_g.1 AT1G76810_circ_g.2
Support reads 6/44
Tissues leaf/root, aerial, inflorescences, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCGTGAGAGGAGCATACAAGTTGGATTTAGTAACCTCAGAACCCTTGTACCAATTCGTTCTTC
TTCTTCAGTATGCTGTCCCACCAGCCATGAATCTAGgtacaattactcagttatttggaactgg
ggagagtgaatgctcagtgattatgctctggacttactctttggcttcgattgcactcactgtt
tggccaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTACAATTACTCAGTTATTTGGAACTGGGGAGAGTGAATGCTCAGTGATTATGCTCTGGACTTA
CTCTTTGGCTTCGATTGCACTCACTGTTTGGCCAACATTCTTCATGTGGCTTGTAGCTTAGAAT
AGACCCCCATACTCATCATGTTACATGTATTGTTTTGTTCCATTGATTCAAGAATTGTTCTTGG
ACTTCCAGATGATTGGATCAAGTATAATAGAGAACATATACTTATAAGTCTTTTGATACGAACT
TTGGACTTACAGTCTGTAACTTACAGATAGAAGATCAAGTCCAGCCTCATCAAGAATCTGCTAT
TTTGATCCTCATTGTCTTGGGATCCATCAAGAGATTGTGAGGCTTAAAATCTCTGTTATGATAC
CCAAATCATTCTCTCTTGAAACAGGGTAAAACCAGAGAACAATCTACTTGACTACTTGTGACTG
TGGCCATGGCAGAAAGCTATTCCTTTGTTTAGTTTGGTACACCTGAGAAAAATTTCAGATTGTT
ACATTTGGTTTAATAGACTATTACATATCAGTCAAGTGAGTACAAATGATGAGAGAAAAGAGTG
GTGACAAAAAGCTCTAATTGGTGGATTTTGTGATAAATTTCTTTACATCTGTGTCCATGTATCT
CAAACCTAATCGTACTCTAAGATCAATTAATGTCTCATCACGTCATATTTGAGATTTTGATGTA
TAACCTTCCACATCAGGGCTAAAGTGCATGCTAGACTCCAAGATATACTATATGTAATATATAA
ATTTGTAGCTAGTGAAACTGTGGAAAAACAAAAATTATAGTACTGAAACATTTTAGTTTATGAA
ACGATTCTTCAGAAAATAGATGACAACAACAGAAGTTTTTTTAAAATCAACGTTATTGTTCTTT
ACCATACGGTAAACACAATGCGACATATCCACATCTTCAGCAAGAACCACAAAGTAACATGGCA
CGTTTCCTAGTCGCTGTGACTAAAGGCATGACGATGGTTCCCTTATAATTTGTATTCTTTTTTT
CTCAGATAAAGAGTTGGTGGTTATGATACGTTGGTTTTTTCATACGGAACAAAAATAATACTTA
CTCTATATCTCTCCTTCACTCTTCCTCTAAAAAGGTAACTATACCATTTCATTTGATTTCTCCA
TAAGTTATCGTCGTTTGGTTCATTGTTTCTTTATCTCAAATCATGTAATATATGGATTAAGTTT
GCAGATTCTAACTTTTGGAAGTAGAGATGAAGCTTTTGGAGTTGTTCATAGCTTCATCGAAACC
AGTTGTGGAGACTTTGTTGATAACATCAGTTGGATTTTATTTGGCTCTCGACACAGTCAATCTT
CTTGGTCATGATGCTCGCAAACATTTGAACAACGTCCGTTTTTTAACTCTCTTCTTTAACAAAT
AATCTAAAAGAGTTAACTTAAATTTCTCTTTTGTTTGTGTATAGATTGTCTTCTATGTGTTTAG
TCCTTCGCTTATTGGAAGCCGCTTAGCTGATAGTGTTACATATGAAAGCTTGGTCAAAATGTAA
GTCAATATCAAATTTTGCATCATCTTTAAGCTCACTTGTTATAATGAAAATGAGGATTTGCATT
GCAGGTGGTTTATGCCGGTTAATGTTCTGCTCACATTCATGATTGGTTCGTTACTCGGCTGGAT
TGTTATTGTCATAACTAAGCCTCCTTCACAGCTTCGTGGTCTCATCATTAGTTGTTGTGCTTCT
GGTACAAACCTTGACATGATTTTAGAATCTTTTTGTCTTTCTTTGTATCGTATGTTTTGCTTAT
GAATGTGATGATGAATGAAACCAAAAACAGGGAATTTGGGGACTATGCCTCTCATTATAATCCC
AGCCATTTGCAAGGAGAAAGGAGGTCCCTTTGGAGATTCTGAGAGTTGCGAGAAATACGGAATG
GGTTATGTTACACTGTCCATGACTGTTAGTTCTTCCTCTCTTGTCTCTCTTCAAGGCTTTTTTT
ATCAGTGTGTATAAACATGACACTAATTGGTATGTATCAGGCGGGAACGGTTTACTCATGGACT
TATATATAAATCTTATGCGTGTGCTATCAAACTCTCCCGTTGAAACACACACACACTCTATTGA
ATCCAACTATGATGACAGCTGCAAAGTCCAACTAATTTCTTCCAAGGAAGAAGAAAAAGAAGAA
GACAACCATCAGGTCTCATTAATCAACAACTCTTCATCATCATCATCAGTGTTATTCATTTTGG
CAGTGACTTTGTGTGTGTTTGACAGGTTGGGAGGTGGGAAGAAGTCAAGCAAAGAGTTGTTTCT
CTGTCAAAGAAAGTCAACCTTGGGTCAATATTTGCTCCAGCAACTATTGCTGCAGTTTGTGTTT
CAGTGGCACCTTTTTTATATACATTCAAGACATTCACACTAGTGTATATCTTTCTTATCTCTTC
TTCTTCTGTTTTCTCAGATTATCGCGCTTGTGATTGGGCTTATTACTCCTTTAAGGAACCTAAT
AATCGGCACCGTAGCTCCTTTCCGTGTGATTCAAGACTCATTAACCCTATTGGGGTAATTGTAG
AATAGTCTCATTATCTTAGAAGTAGCTCAACAAATGATTCATCTCTTTGAAAAACTCACTTTTT
CTGTGTCTTGTTTCTTTTGGCTAAAGAGATGGGGCCATTCCTGCTATGACCCTGATTCTTGGAG
GAAACTTACTTAAAGGAATGAGGAGGTCGGAAGTGAGGAGTTCAGAAATGAAAAACTCCTGCAT
TATCGGCGTCTTGGTAGCTCGTTACATTTTGCTACCTGTAAGCGGTGTTTTACTCGTGAGAGGA
GCATACAAGTTGGATTTAGTAACCTCAGAACCCTTGTACCAATTCGTTCTTCTTCTTCAGTATG
CTGTCCCACCAGCCATGAATCTAG
Conservation Information
Conserved circRNAs NA
PMCS 0.699421307
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR5021
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017