Detail information of 1_circ_ag.2


General Information
CircRNA Name 1_circ_ag.2
ID in PlantcircBase ath_circ_010519
Alias NA
Organism Arabidpsis thaliana
Position chr1: 28777296-28779278  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.2 1_circ_ag.3 AT1G75920_circ_g.1 1_circ_ag.2 AT1G75940_circ_g.1 AT1G75940_circ_g.2 AT1G75940_circ_g.3 AT1G75940_circ_g.4 AT1G75940_circ_g.5 AT1G75950_circ_g.1 AT1G76010_circ_g.1 AT1G76010_circ_g.2 AT1G76010_circ_g.3 AT1G76010_circ_g.4 AT1G76010_circ_g.5 AT1G76010_circ_g.6 AT1G76010_circ_g.7 AT1G76010_circ_g.8 AT1G76010_circ_g.9 AT1G76010_circ_g.10 AT1G76010_circ_g.11 AT1G76020_circ_g.1 AT1G76030_circ_g.1 AT1G76030_circ_g.2 AT1G76030_circ_g.3 AT1G76030_circ_g.4 AT1G76030_circ_g.5 AT1G76030_circ_g.6 AT1G76030_circ_g.7 AT1G76040_circ_g.1 AT1G76040_circ_g.2 AT1G76050_circ_g.1 AT1G76050_circ_g.2 AT1G76050_circ_g.3 AT1G76050_circ_g.4 AT1G76060_circ_g.1 AT1G76090_circ_g.1 AT1G76090_circ_g.2 AT1G76100_circ_g.1 AT1G76100_circ_g.2 AT1G76110_circ_g.1 AT1G76130_circ_g.1 AT1G76130_circ_g.2 AT1G76140_circ_g.1 AT1G76140_circ_g.2 AT1G76150_circ_g.1 AT1G76150_circ_g.2 AT1G76150_circ_g.3 AT1G76160_circ_g.1 AT1G76160_circ_g.2 AT1G76160_circ_g.3 AT1G76160_circ_g.4 AT1G76180_circ_g.1 AT1G76180_circ_g.2 AT1G76180_circ_g.3 AT1G76180_circ_g.4 AT1G76180_circ_g.5 AT1G76180_circ_g.6 AT1G76180_circ_g.7 AT1G76180_circ_g.8 AT1G76180_circ_g.9 AT1G76180_circ_g.10 AT1G76180_circ_g.11 AT1G76180_circ_g.12 AT1G76180_circ_g.13 AT1G76180_circ_g.14 AT1G76180_circ_g.15 AT1G76180_circ_g.16 AT1G76180_circ_g.17 AT1G76180_circ_g.18 AT1G76180_circ_g.19 AT1G76180_circ_g.20 AT1G76180_circ_g.21 AT1G76180_circ_g.22 AT1G76180_circ_g.23 AT1G76180_circ_g.24 AT1G76180_circ_g.25 AT1G76180_circ_g.26 AT1G76180_circ_g.27 AT1G76180_circ_g.28 AT1G76180_circ_g.29 AT1G76180_circ_g.30 AT1G76260_circ_g.1 AT1G76270_circ_g.1 AT1G76280_circ_g.1 AT1G76280_circ_g.2 AT1G76280_circ_g.3 AT1G76280_circ_g.4 AT1G76280_circ_g.5 AT1G76310_circ_g.1 AT1G76310_circ_g.2 AT1G76320_circ_g.1 AT1G76350_circ_g.1 AT1G76350_circ_g.2 AT1G76380_circ_g.1 AT1G76380_circ_g.2 AT1G76380_circ_g.3 AT1G76380_circ_g.4 AT1G76400_circ_g.1 AT1G76400_circ_g.2 AT1G76405_circ_g.1 AT1G76450_circ_g.1 AT1G76450_circ_g.2 AT1G76450_circ_g.3 AT1G76450_circ_g.4 AT1G76450_circ_g.5 AT1G76460_circ_g.1 AT1G76460_circ_g.2 AT1G76470_circ_g.1 AT1G76490_circ_g.1 AT1G76490_circ_g.2 AT1G76490_circ_g.3 AT1G76490_circ_g.4 AT1G76510_circ_g.1 AT1G76510_circ_g.2 AT1G76510_circ_g.3 AT1G76510_circ_g.4 AT1G76510_circ_g.5 AT1G76510_circ_g.6 AT1G76510_circ_g.7 AT1G76510_circ_g.8 AT1G76510_circ_g.9 AT1G76510_circ_g.10 1_circ_ag.11 AT1G76520_circ_g.1 AT1G76520_circ_g.2 1_circ_ag.3 AT1G76530_circ_g.1 AT1G76540_circ_g.1 AT1G76540_circ_g.2 AT1G76540_circ_g.3 AT1G76550_circ_g.1 AT1G76550_circ_g.2 AT1G76580_circ_g.1 AT1G76580_circ_g.2 AT1G76580_circ_g.3 AT1G76580_circ_g.4 AT1G76590_circ_g.1 AT1G76620_circ_g.1 AT1G76620_circ_g.2 AT1G76630_circ_g.1 AT1G76630_circ_g.2 AT1G76630_circ_g.3 AT1G76660_circ_g.1 AT1G76660_circ_g.2 AT1G76670_circ_g.1 AT1G76670_circ_g.2 AT1G76670_circ_g.3 1_circ_ag.4 AT1G76680_circ_g.1 1_circ_ag.3 1_circ_ag.4 AT1G76680_circ_g.5 AT1G76700_circ_g.1 1_circ_ag.2 AT1G76700_circ_g.3 AT1G76700_circ_g.4 AT1G76700_circ_g.5 1_circ_ag.6 1_circ_ag.7 1_circ_ag.8 AT1G76790_circ_g.1 AT1G76790_circ_g.2 AT1G76790_circ_g.3 AT1G76810_circ_g.1 AT1G76810_circ_g.2
Support reads 31
Tissues root, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCGTTCCTCAGCCTCACGCTATCTTGTATTACTCTCAGAGAACGTCACCGGGAGGTTTTCTCAT
CGCTGAAGCCACCGGGGTTTCAGATACAGCTCAAGGatatcaagatactcctgggatatggact
aaagagcatgtggaggcatggaagccaatcgttgatgctgtacatgccaaaggtggtatcttct
tctgtcag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATATCAAGATACTCCTGGGATATGGACTAAAGAGCATGTGGAGGCATGGAAGCCAATCGTTGAT
GCTGTACATGCCAAAGGTGGTATCTTCTTCTGTCAGATCTGGCATGTTGGCCGCGTTTCTAATA
GCGGGTTTCAGCCAAATGGAAAAGCTCCTATCTCTTGTTCGGATAAGCCATTGATGCCTCAAAT
TCGCTCTAATGGCATCGATGAAGCTCTCTTTACCCCTCCAAGACGGCTTGGTATCGAAGAAATC
CCCGGCATTGTCAATGATTTTAGGCTTGCTGCAAGAAATGCTATGGAAGCTGGTAAGCACATTT
TGGATTTGGAATTCAAGAAGCTGAAACCATTCAAGATTCTTATATGTGTCCTTGTTGTTGCAGG
TTTTGATGGAGTTGAGATTCATGGAGCTAATGGCTATCTGATTGACCAGTTCATGAAGGATACG
GTGAATGATAGAACTGATGAATACGGTGGATCATTGCAAAACCGTTGCAAATTTCCTCTAGAAA
TAGTCGATGCAGTTGCTAAGGAGATCGGACCAGACCGTGTTGGAATCAGGCTCTCTCCATTTGC
TGACTACATGGAATCTGGAGACACTAATCCAGGAGCATTAGGGCTTTATATGGCGGAATCTTTG
AACAAATACGGAATCCTCTACTGTCATGTGATTGAAGCGAGAATGAAAACAATGGGAGAAGTAC
ATGCTTGTCCTCACACACTAATGCCGATGAGGAAAGCGTTTAAGGGGACTTTTATCTCCGCAGG
AGGTTTCACGAGGGAAGATGGGAATGAGGCTGTGTCAAAGGGAAGAACTGATTTGGTGGCTTAT
GGTCGATGGTTTCTAGCCAACCCGGACCTGCCAAAGAGGTTCCAAGTGGATGCACCGCTGAATA
AGTACGATAGACCAACGTTTTACACTTCTGATCCAGTCGTCGGTTACACCGATTACCCTTTCCT
CGAATCAACAGCTTAAAATTGTTATCAATAATGTAATGTAGTGTGTTTCCCTTATATAAGATGT
AATAAGTTTCTGGCTTTTCATTTATACTTTTTAAGTTTAAGTCATAAAACCTTCACAAAAATTT
CCACGGACACATTATCACAAAAGCGCTTTCTAGAGACCAACATAACTTAACTTGATTGTTGATT
TCTGTTTGATGTGATCATGCCGCAATCCAGTGTGTTCTCATGATGCTATCTTCCCTCCTTTCAC
ATGCTGCACAGAACAAAACAGAGCATTTTCCTCCCAACTATACCTAATTTTTTTTGGTCGGTGG
TCAAAGTTATACATCGGAAGAATCTGTTGAAATCATATTGAGGCCCCTCATTTGTTATGTTATG
TAATCTCCAATGGATCAAAAGTAGAATCCCAACTGTAGAAGATGATACTATCATGCTAGGTAGA
AGACAGCATGGAATATGGGGTAAGTTCAAAGTGGTTACACTCTAATGTCGTCTCAACGAATACG
TCTTTATGAAGAAATAAAAAAATCTAAGTGGTTGGATGCGTCATCAATGACGACCACGTCGTTA
AAGACAGAAAGAAACACTTGCGTTCCTGATTCTCTGATCAATCAATGTGTATAAATATGTTCGG
ATATGTCCATTATCTTACGCAATCTTGAAAAGTGTTTTTGAGAGAAATATAGGTTTTACAAAAT
CCACCGTTGTGAATTCATGGAAATGGTAAACGCAGAAGCAAAACAGAGTGTCCCTCTTCTCACC
CCTTATAAGATGGGAAGATTCAATCTTTCTCATAGGTAATCTAAATTTTGATCCGTTCTTTATG
TTTTGTTGACTTTTGCTGAATCCTTAAATTAAGAAGCTTGATTCATCTAGGGTTGTTCTAGCAC
CATTGACGAGACAGAAATCGTACGGAAGCGTTCCTCAGCCTCACGCTATCTTGTATTACTCTCA
GAGAACGTCACCGGGAGGTTTTCTCATCGCTGAAGCCACCGGGGTTTCAGATACAGCTCAAGG
Conservation Information
Conserved circRNAs NA
PMCS 0.84570078
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017