Detail information of 1_circ_ag.3


General Information
CircRNA Name 1_circ_ag.3
ID in PlantcircBase ath_circ_010520
Alias Chr1:28777678|28779679
Organism Arabidpsis thaliana
Position chr1: 28777678-28779679  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRCexplorer; CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.2 1_circ_ag.3 AT1G75920_circ_g.1 1_circ_ag.2 AT1G75940_circ_g.1 AT1G75940_circ_g.2 AT1G75940_circ_g.3 AT1G75940_circ_g.4 AT1G75940_circ_g.5 AT1G75950_circ_g.1 AT1G76010_circ_g.1 AT1G76010_circ_g.2 AT1G76010_circ_g.3 AT1G76010_circ_g.4 AT1G76010_circ_g.5 AT1G76010_circ_g.6 AT1G76010_circ_g.7 AT1G76010_circ_g.8 AT1G76010_circ_g.9 AT1G76010_circ_g.10 AT1G76010_circ_g.11 AT1G76020_circ_g.1 AT1G76030_circ_g.1 AT1G76030_circ_g.2 AT1G76030_circ_g.3 AT1G76030_circ_g.4 AT1G76030_circ_g.5 AT1G76030_circ_g.6 AT1G76030_circ_g.7 AT1G76040_circ_g.1 AT1G76040_circ_g.2 AT1G76050_circ_g.1 AT1G76050_circ_g.2 AT1G76050_circ_g.3 AT1G76050_circ_g.4 AT1G76060_circ_g.1 AT1G76090_circ_g.1 AT1G76090_circ_g.2 AT1G76100_circ_g.1 AT1G76100_circ_g.2 AT1G76110_circ_g.1 AT1G76130_circ_g.1 AT1G76130_circ_g.2 AT1G76140_circ_g.1 AT1G76140_circ_g.2 AT1G76150_circ_g.1 AT1G76150_circ_g.2 AT1G76150_circ_g.3 AT1G76160_circ_g.1 AT1G76160_circ_g.2 AT1G76160_circ_g.3 AT1G76160_circ_g.4 AT1G76180_circ_g.1 AT1G76180_circ_g.2 AT1G76180_circ_g.3 AT1G76180_circ_g.4 AT1G76180_circ_g.5 AT1G76180_circ_g.6 AT1G76180_circ_g.7 AT1G76180_circ_g.8 AT1G76180_circ_g.9 AT1G76180_circ_g.10 AT1G76180_circ_g.11 AT1G76180_circ_g.12 AT1G76180_circ_g.13 AT1G76180_circ_g.14 AT1G76180_circ_g.15 AT1G76180_circ_g.16 AT1G76180_circ_g.17 AT1G76180_circ_g.18 AT1G76180_circ_g.19 AT1G76180_circ_g.20 AT1G76180_circ_g.21 AT1G76180_circ_g.22 AT1G76180_circ_g.23 AT1G76180_circ_g.24 AT1G76180_circ_g.25 AT1G76180_circ_g.26 AT1G76180_circ_g.27 AT1G76180_circ_g.28 AT1G76180_circ_g.29 AT1G76180_circ_g.30 AT1G76260_circ_g.1 AT1G76270_circ_g.1 AT1G76280_circ_g.1 AT1G76280_circ_g.2 AT1G76280_circ_g.3 AT1G76280_circ_g.4 AT1G76280_circ_g.5 AT1G76310_circ_g.1 AT1G76310_circ_g.2 AT1G76320_circ_g.1 AT1G76350_circ_g.1 AT1G76350_circ_g.2 AT1G76380_circ_g.1 AT1G76380_circ_g.2 AT1G76380_circ_g.3 AT1G76380_circ_g.4 AT1G76400_circ_g.1 AT1G76400_circ_g.2 AT1G76405_circ_g.1 AT1G76450_circ_g.1 AT1G76450_circ_g.2 AT1G76450_circ_g.3 AT1G76450_circ_g.4 AT1G76450_circ_g.5 AT1G76460_circ_g.1 AT1G76460_circ_g.2 AT1G76470_circ_g.1 AT1G76490_circ_g.1 AT1G76490_circ_g.2 AT1G76490_circ_g.3 AT1G76490_circ_g.4 AT1G76510_circ_g.1 AT1G76510_circ_g.2 AT1G76510_circ_g.3 AT1G76510_circ_g.4 AT1G76510_circ_g.5 AT1G76510_circ_g.6 AT1G76510_circ_g.7 AT1G76510_circ_g.8 AT1G76510_circ_g.9 AT1G76510_circ_g.10 1_circ_ag.11 AT1G76520_circ_g.1 AT1G76520_circ_g.2 1_circ_ag.3 AT1G76530_circ_g.1 AT1G76540_circ_g.1 AT1G76540_circ_g.2 AT1G76540_circ_g.3 AT1G76550_circ_g.1 AT1G76550_circ_g.2 AT1G76580_circ_g.1 AT1G76580_circ_g.2 AT1G76580_circ_g.3 AT1G76580_circ_g.4 AT1G76590_circ_g.1 AT1G76620_circ_g.1 AT1G76620_circ_g.2 AT1G76630_circ_g.1 AT1G76630_circ_g.2 AT1G76630_circ_g.3 AT1G76660_circ_g.1 AT1G76660_circ_g.2 AT1G76670_circ_g.1 AT1G76670_circ_g.2 AT1G76670_circ_g.3 1_circ_ag.4 AT1G76680_circ_g.1 1_circ_ag.2 1_circ_ag.4 AT1G76680_circ_g.5 AT1G76700_circ_g.1 1_circ_ag.2 AT1G76700_circ_g.3 AT1G76700_circ_g.4 AT1G76700_circ_g.5 1_circ_ag.6 1_circ_ag.7 1_circ_ag.8 AT1G76790_circ_g.1 AT1G76790_circ_g.2 AT1G76790_circ_g.3 AT1G76810_circ_g.1 AT1G76810_circ_g.2
Support reads 3
Tissues seedling
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATGAAGCTCGCTTTACCCCTCCAAGACGTCTAAGTATCGAAGAAATCCCCGGCATTGTCAATG
ATTTTAGGCTTGCTGCAAGAAATGCTATGGAAGCTGggttttgatggagttgagattcatggag
ctaatggctatctgattgaccagttcatgaaggatacggtgaatgatagaactgatgaatacgg
tggatcat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTTTGATGGAGTTGAGATTCATGGAGCTAATGGCTATCTGATTGACCAGTTCATGAAGGATA
CGGTGAATGATAGAACTGATGAATACGGTGGATCATTGCAAAACCGTTGCAAATTTCCTCTAGA
AATAGTCGATGCAGTTGCTAAGGAGATCGGACCAGACCGTGTTGGAATCAGGCTCTCTCCATTT
GCTGACTACATGGAATCTGGAGACACTAATCCAGGAGCATTAGGGCTTTATATGGCGGAATCTT
TGAACAAATACGGAATCCTCTACTGTCATGTGATTGAAGCGAGAATGAAAACAATGGGAGAAGT
ACATGCTTGTCCTCACACACTAATGCCGATGAGGAAAGCGTTTAAGGGGACTTTTATCTCCGCA
GGAGGTTTCACGAGGGAAGATGGGAATGAGGCTGTGTCAAAGGGAAGAACTGATTTGGTGGCTT
ATGGTCGATGGTTTCTAGCCAACCCGGACCTGCCAAAGAGGTTCCAAGTGGATGCACCGCTGAA
TAAGTACGATAGACCAACGTTTTACACTTCTGATCCAGTCGTCGGTTACACCGATTACCCTTTC
CTCGAATCAACAGCTTAAAATTGTTATCAATAATGTAATGTAGTGTGTTTCCCTTATATAAGAT
GTAATAAGTTTCTGGCTTTTCATTTATACTTTTTAAGTTTAAGTCATAAAACCTTCACAAAAAT
TTCCACGGACACATTATCACAAAAGCGCTTTCTAGAGACCAACATAACTTAACTTGATTGTTGA
TTTCTGTTTGATGTGATCATGCCGCAATCCAGTGTGTTCTCATGATGCTATCTTCCCTCCTTTC
ACATGCTGCACAGAACAAAACAGAGCATTTTCCTCCCAACTATACCTAATTTTTTTTGGTCGGT
GGTCAAAGTTATACATCGGAAGAATCTGTTGAAATCATATTGAGGCCCCTCATTTGTTATGTTA
TGTAATCTCCAATGGATCAAAAGTAGAATCCCAACTGTAGAAGATGATACTATCATGCTAGGTA
GAAGACAGCATGGAATATGGGGTAAGTTCAAAGTGGTTACACTCTAATGTCGTCTCAACGAATA
CGTCTTTATGAAGAAATAAAAAAATCTAAGTGGTTGGATGCGTCATCAATGACGACCACGTCGT
TAAAGACAGAAAGAAACACTTGCGTTCCTGATTCTCTGATCAATCAATGTGTATAAATATGTTC
GGATATGTCCATTATCTTACGCAATCTTGAAAAGTGTTTTTGAGAGAAATATAGGTTTTACAAA
ATCCACCGTTGTGAATTCATGGAAATGGTAAACGCAGAAGCAAAACAGAGTGTCCCTCTTCTCA
CCCCTTATAAGATGGGAAGATTCAATCTTTCTCATAGGTAATCTAAATTTTGATCCGTTCTTTA
TGTTTTGTTGACTTTTGCTGAATCCTTAAATTAAGAAGCTTGATTCATCTAGGGTTGTTCTAGC
ACCATTGACGAGACAGAAATCGTACGGAAGCGTTCCTCAGCCTCACGCTATCTTGTATTACTCT
CAGAGAACGTCACCGGGAGGTTTTCTCATCGCTGAAGCCACCGGGGTTTCAGATACAGCTCAAG
GGTAACTCAAAAACCCTTCCTTTTCATTAAAGTTTACGTTTTTATTTGTGGGTTATTGCTGATC
ATCCTACATTTGTGTGATTTGATCTTGTAGGTATCCAGATACACCTGGGATATGGACTAAAGAG
CATGTGGAGGCATGGAAGCCAATCGTTGATGCTGTACATGCCAAAGGTGGTATCTTCTTCTGTC
AGATCTGGCATGTTGGCCGCGTTTCTAATCGCGGTTTTCAGCCAAGGAGGCAAGCTCCTATCTC
TTGTACGGGGAAGCCAATTATGCCTCAAATGCGTGCTAATGGCATTGATGAAGCTCGCTTTACC
CCTCCAAGACGTCTAAGTATCGAAGAAATCCCCGGCATTGTCAATGATTTTAGGCTTGCTGCAA
GAAATGCTATGGAAGCTG
Conservation Information
Conserved circRNAs NA
PMCS 0.21443377
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to methyl jasmonate
Other Information
References Zhang et al., 2020