Detail information of 1_circ_ag.4


General Information
CircRNA Name 1_circ_ag.4
ID in PlantcircBase ath_circ_010521
Alias At_ciR46
Organism Arabidpsis thaliana
Position chr1: 28777679-28779679  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.2 1_circ_ag.3 AT1G75920_circ_g.1 1_circ_ag.2 AT1G75940_circ_g.1 AT1G75940_circ_g.2 AT1G75940_circ_g.3 AT1G75940_circ_g.4 AT1G75940_circ_g.5 AT1G75950_circ_g.1 AT1G76010_circ_g.1 AT1G76010_circ_g.2 AT1G76010_circ_g.3 AT1G76010_circ_g.4 AT1G76010_circ_g.5 AT1G76010_circ_g.6 AT1G76010_circ_g.7 AT1G76010_circ_g.8 AT1G76010_circ_g.9 AT1G76010_circ_g.10 AT1G76010_circ_g.11 AT1G76020_circ_g.1 AT1G76030_circ_g.1 AT1G76030_circ_g.2 AT1G76030_circ_g.3 AT1G76030_circ_g.4 AT1G76030_circ_g.5 AT1G76030_circ_g.6 AT1G76030_circ_g.7 AT1G76040_circ_g.1 AT1G76040_circ_g.2 AT1G76050_circ_g.1 AT1G76050_circ_g.2 AT1G76050_circ_g.3 AT1G76050_circ_g.4 AT1G76060_circ_g.1 AT1G76090_circ_g.1 AT1G76090_circ_g.2 AT1G76100_circ_g.1 AT1G76100_circ_g.2 AT1G76110_circ_g.1 AT1G76130_circ_g.1 AT1G76130_circ_g.2 AT1G76140_circ_g.1 AT1G76140_circ_g.2 AT1G76150_circ_g.1 AT1G76150_circ_g.2 AT1G76150_circ_g.3 AT1G76160_circ_g.1 AT1G76160_circ_g.2 AT1G76160_circ_g.3 AT1G76160_circ_g.4 AT1G76180_circ_g.1 AT1G76180_circ_g.2 AT1G76180_circ_g.3 AT1G76180_circ_g.4 AT1G76180_circ_g.5 AT1G76180_circ_g.6 AT1G76180_circ_g.7 AT1G76180_circ_g.8 AT1G76180_circ_g.9 AT1G76180_circ_g.10 AT1G76180_circ_g.11 AT1G76180_circ_g.12 AT1G76180_circ_g.13 AT1G76180_circ_g.14 AT1G76180_circ_g.15 AT1G76180_circ_g.16 AT1G76180_circ_g.17 AT1G76180_circ_g.18 AT1G76180_circ_g.19 AT1G76180_circ_g.20 AT1G76180_circ_g.21 AT1G76180_circ_g.22 AT1G76180_circ_g.23 AT1G76180_circ_g.24 AT1G76180_circ_g.25 AT1G76180_circ_g.26 AT1G76180_circ_g.27 AT1G76180_circ_g.28 AT1G76180_circ_g.29 AT1G76180_circ_g.30 AT1G76260_circ_g.1 AT1G76270_circ_g.1 AT1G76280_circ_g.1 AT1G76280_circ_g.2 AT1G76280_circ_g.3 AT1G76280_circ_g.4 AT1G76280_circ_g.5 AT1G76310_circ_g.1 AT1G76310_circ_g.2 AT1G76320_circ_g.1 AT1G76350_circ_g.1 AT1G76350_circ_g.2 AT1G76380_circ_g.1 AT1G76380_circ_g.2 AT1G76380_circ_g.3 AT1G76380_circ_g.4 AT1G76400_circ_g.1 AT1G76400_circ_g.2 AT1G76405_circ_g.1 AT1G76450_circ_g.1 AT1G76450_circ_g.2 AT1G76450_circ_g.3 AT1G76450_circ_g.4 AT1G76450_circ_g.5 AT1G76460_circ_g.1 AT1G76460_circ_g.2 AT1G76470_circ_g.1 AT1G76490_circ_g.1 AT1G76490_circ_g.2 AT1G76490_circ_g.3 AT1G76490_circ_g.4 AT1G76510_circ_g.1 AT1G76510_circ_g.2 AT1G76510_circ_g.3 AT1G76510_circ_g.4 AT1G76510_circ_g.5 AT1G76510_circ_g.6 AT1G76510_circ_g.7 AT1G76510_circ_g.8 AT1G76510_circ_g.9 AT1G76510_circ_g.10 1_circ_ag.11 AT1G76520_circ_g.1 AT1G76520_circ_g.2 1_circ_ag.3 AT1G76530_circ_g.1 AT1G76540_circ_g.1 AT1G76540_circ_g.2 AT1G76540_circ_g.3 AT1G76550_circ_g.1 AT1G76550_circ_g.2 AT1G76580_circ_g.1 AT1G76580_circ_g.2 AT1G76580_circ_g.3 AT1G76580_circ_g.4 AT1G76590_circ_g.1 AT1G76620_circ_g.1 AT1G76620_circ_g.2 AT1G76630_circ_g.1 AT1G76630_circ_g.2 AT1G76630_circ_g.3 AT1G76660_circ_g.1 AT1G76660_circ_g.2 AT1G76670_circ_g.1 AT1G76670_circ_g.2 AT1G76670_circ_g.3 1_circ_ag.4 AT1G76680_circ_g.1 1_circ_ag.2 1_circ_ag.3 AT1G76680_circ_g.5 AT1G76700_circ_g.1 1_circ_ag.2 AT1G76700_circ_g.3 AT1G76700_circ_g.4 AT1G76700_circ_g.5 1_circ_ag.6 1_circ_ag.7 1_circ_ag.8 AT1G76790_circ_g.1 AT1G76790_circ_g.2 AT1G76790_circ_g.3 AT1G76810_circ_g.1 AT1G76810_circ_g.2
Support reads 200/486
Tissues leaf/root, leaf, aerial, seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATGAAGCTCGCTTTACCCCTCCAAGACGTCTAAGTATCGAAGAAATCCCCGGCATTGTCAATG
ATTTTAGGCTTGCTGCAAGAAATGCTATGGAAGCTGgttttgatggagttgagattcatggagc
taatggctatctgattgaccagttcatgaaggatacggtgaatgatagaactgatgaatacggt
ggatcatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTTGATGGAGTTGAGATTCATGGAGCTAATGGCTATCTGATTGACCAGTTCATGAAGGATAC
GGTGAATGATAGAACTGATGAATACGGTGGATCATTGCAAAACCGTTGCAAATTTCCTCTAGAA
ATAGTCGATGCAGTTGCTAAGGAGATCGGACCAGACCGTGTTGGAATCAGGCTCTCTCCATTTG
CTGACTACATGGAATCTGGAGACACTAATCCAGGAGCATTAGGGCTTTATATGGCGGAATCTTT
GAACAAATACGGAATCCTCTACTGTCATGTGATTGAAGCGAGAATGAAAACAATGGGAGAAGTA
CATGCTTGTCCTCACACACTAATGCCGATGAGGAAAGCGTTTAAGGGGACTTTTATCTCCGCAG
GAGGTTTCACGAGGGAAGATGGGAATGAGGCTGTGTCAAAGGGAAGAACTGATTTGGTGGCTTA
TGGTCGATGGTTTCTAGCCAACCCGGACCTGCCAAAGAGGTTCCAAGTGGATGCACCGCTGAAT
AAGTACGATAGACCAACGTTTTACACTTCTGATCCAGTCGTCGGTTACACCGATTACCCTTTCC
TCGAATCAACAGCTTAAAATTGTTATCAATAATGTAATGTAGTGTGTTTCCCTTATATAAGATG
TAATAAGTTTCTGGCTTTTCATTTATACTTTTTAAGTTTAAGTCATAAAACCTTCACAAAAATT
TCCACGGACACATTATCACAAAAGCGCTTTCTAGAGACCAACATAACTTAACTTGATTGTTGAT
TTCTGTTTGATGTGATCATGCCGCAATCCAGTGTGTTCTCATGATGCTATCTTCCCTCCTTTCA
CATGCTGCACAGAACAAAACAGAGCATTTTCCTCCCAACTATACCTAATTTTTTTTGGTCGGTG
GTCAAAGTTATACATCGGAAGAATCTGTTGAAATCATATTGAGGCCCCTCATTTGTTATGTTAT
GTAATCTCCAATGGATCAAAAGTAGAATCCCAACTGTAGAAGATGATACTATCATGCTAGGTAG
AAGACAGCATGGAATATGGGGTAAGTTCAAAGTGGTTACACTCTAATGTCGTCTCAACGAATAC
GTCTTTATGAAGAAATAAAAAAATCTAAGTGGTTGGATGCGTCATCAATGACGACCACGTCGTT
AAAGACAGAAAGAAACACTTGCGTTCCTGATTCTCTGATCAATCAATGTGTATAAATATGTTCG
GATATGTCCATTATCTTACGCAATCTTGAAAAGTGTTTTTGAGAGAAATATAGGTTTTACAAAA
TCCACCGTTGTGAATTCATGGAAATGGTAAACGCAGAAGCAAAACAGAGTGTCCCTCTTCTCAC
CCCTTATAAGATGGGAAGATTCAATCTTTCTCATAGGTAATCTAAATTTTGATCCGTTCTTTAT
GTTTTGTTGACTTTTGCTGAATCCTTAAATTAAGAAGCTTGATTCATCTAGGGTTGTTCTAGCA
CCATTGACGAGACAGAAATCGTACGGAAGCGTTCCTCAGCCTCACGCTATCTTGTATTACTCTC
AGAGAACGTCACCGGGAGGTTTTCTCATCGCTGAAGCCACCGGGGTTTCAGATACAGCTCAAGG
GTAACTCAAAAACCCTTCCTTTTCATTAAAGTTTACGTTTTTATTTGTGGGTTATTGCTGATCA
TCCTACATTTGTGTGATTTGATCTTGTAGGTATCCAGATACACCTGGGATATGGACTAAAGAGC
ATGTGGAGGCATGGAAGCCAATCGTTGATGCTGTACATGCCAAAGGTGGTATCTTCTTCTGTCA
GATCTGGCATGTTGGCCGCGTTTCTAATCGCGGTTTTCAGCCAAGGAGGCAAGCTCCTATCTCT
TGTACGGGGAAGCCAATTATGCCTCAAATGCGTGCTAATGGCATTGATGAAGCTCGCTTTACCC
CTCCAAGACGTCTAAGTATCGAAGAAATCCCCGGCATTGTCAATGATTTTAGGCTTGCTGCAAG
AAATGCTATGGAAGCTG
Conservation Information
Conserved circRNAs NA
PMCS 0.868012794
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017