Detail information of AT1G76510_circ_g.9


General Information
CircRNA Name AT1G76510_circ_g.9
ID in PlantcircBase ath_circ_010490
Alias AT1G76510_C1
Organism Arabidpsis thaliana
Position chr1: 28711690-28712510  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method MapSplice, CIRI2
Parent gene AT1G76510
Parent gene annotation ARID/BRIGHT DNA-binding domain-containing protein
Parent gene strand -
Alternative splicing 1_circ_ag.2 1_circ_ag.3 AT1G75920_circ_g.1 1_circ_ag.2 AT1G75940_circ_g.1 AT1G75940_circ_g.2 AT1G75940_circ_g.3 AT1G75940_circ_g.4 AT1G75940_circ_g.5 AT1G75950_circ_g.1 AT1G76010_circ_g.1 AT1G76010_circ_g.2 AT1G76010_circ_g.3 AT1G76010_circ_g.4 AT1G76010_circ_g.5 AT1G76010_circ_g.6 AT1G76010_circ_g.7 AT1G76010_circ_g.8 AT1G76010_circ_g.9 AT1G76010_circ_g.10 AT1G76010_circ_g.11 AT1G76020_circ_g.1 AT1G76030_circ_g.1 AT1G76030_circ_g.2 AT1G76030_circ_g.3 AT1G76030_circ_g.4 AT1G76030_circ_g.5 AT1G76030_circ_g.6 AT1G76030_circ_g.7 AT1G76040_circ_g.1 AT1G76040_circ_g.2 AT1G76050_circ_g.1 AT1G76050_circ_g.2 AT1G76050_circ_g.3 AT1G76050_circ_g.4 AT1G76060_circ_g.1 AT1G76090_circ_g.1 AT1G76090_circ_g.2 AT1G76100_circ_g.1 AT1G76100_circ_g.2 AT1G76110_circ_g.1 AT1G76130_circ_g.1 AT1G76130_circ_g.2 AT1G76140_circ_g.1 AT1G76140_circ_g.2 AT1G76150_circ_g.1 AT1G76150_circ_g.2 AT1G76150_circ_g.3 AT1G76160_circ_g.1 AT1G76160_circ_g.2 AT1G76160_circ_g.3 AT1G76160_circ_g.4 AT1G76180_circ_g.1 AT1G76180_circ_g.2 AT1G76180_circ_g.3 AT1G76180_circ_g.4 AT1G76180_circ_g.5 AT1G76180_circ_g.6 AT1G76180_circ_g.7 AT1G76180_circ_g.8 AT1G76180_circ_g.9 AT1G76180_circ_g.10 AT1G76180_circ_g.11 AT1G76180_circ_g.12 AT1G76180_circ_g.13 AT1G76180_circ_g.14 AT1G76180_circ_g.15 AT1G76180_circ_g.16 AT1G76180_circ_g.17 AT1G76180_circ_g.18 AT1G76180_circ_g.19 AT1G76180_circ_g.20 AT1G76180_circ_g.21 AT1G76180_circ_g.22 AT1G76180_circ_g.23 AT1G76180_circ_g.24 AT1G76180_circ_g.25 AT1G76180_circ_g.26 AT1G76180_circ_g.27 AT1G76180_circ_g.28 AT1G76180_circ_g.29 AT1G76180_circ_g.30 AT1G76260_circ_g.1 AT1G76270_circ_g.1 AT1G76280_circ_g.1 AT1G76280_circ_g.2 AT1G76280_circ_g.3 AT1G76280_circ_g.4 AT1G76280_circ_g.5 AT1G76310_circ_g.1 AT1G76310_circ_g.2 AT1G76320_circ_g.1 AT1G76350_circ_g.1 AT1G76350_circ_g.2 AT1G76380_circ_g.1 AT1G76380_circ_g.2 AT1G76380_circ_g.3 AT1G76380_circ_g.4 AT1G76400_circ_g.1 AT1G76400_circ_g.2 AT1G76405_circ_g.1 AT1G76450_circ_g.1 AT1G76450_circ_g.2 AT1G76450_circ_g.3 AT1G76450_circ_g.4 AT1G76450_circ_g.5 AT1G76460_circ_g.1 AT1G76460_circ_g.2 AT1G76470_circ_g.1 AT1G76490_circ_g.1 AT1G76490_circ_g.2 AT1G76490_circ_g.3 AT1G76490_circ_g.4 AT1G76510_circ_g.1 AT1G76510_circ_g.2 AT1G76510_circ_g.3 AT1G76510_circ_g.4 AT1G76510_circ_g.5 AT1G76510_circ_g.6 AT1G76510_circ_g.7 AT1G76510_circ_g.8 AT1G76510_circ_g.10 1_circ_ag.11 AT1G76520_circ_g.1 AT1G76520_circ_g.2 1_circ_ag.3 AT1G76530_circ_g.1 AT1G76540_circ_g.1 AT1G76540_circ_g.2 AT1G76540_circ_g.3 AT1G76550_circ_g.1 AT1G76550_circ_g.2 AT1G76580_circ_g.1 AT1G76580_circ_g.2 AT1G76580_circ_g.3 AT1G76580_circ_g.4 AT1G76590_circ_g.1 AT1G76620_circ_g.1 AT1G76620_circ_g.2 AT1G76630_circ_g.1 AT1G76630_circ_g.2 AT1G76630_circ_g.3 AT1G76660_circ_g.1 AT1G76660_circ_g.2 AT1G76670_circ_g.1 AT1G76670_circ_g.2 AT1G76670_circ_g.3 1_circ_ag.4 AT1G76680_circ_g.1 1_circ_ag.2 1_circ_ag.3 1_circ_ag.4 AT1G76680_circ_g.5 AT1G76700_circ_g.1 1_circ_ag.2 AT1G76700_circ_g.3 AT1G76700_circ_g.4 AT1G76700_circ_g.5 1_circ_ag.6 1_circ_ag.7 1_circ_ag.8 AT1G76790_circ_g.1 AT1G76790_circ_g.2 AT1G76790_circ_g.3 AT1G76810_circ_g.1 AT1G76810_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G76510.4:3
AT1G76510.3:3
AT1G76510.2:3
AT1G76510.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTCTTTCTCTAGTTCTGAAGGCTCCTCTACAACACCTTTGGTACCAGACGGCACATCTTGCTC
TTGCATTTCAGTATCCGCCATCATGAAGCTAATTCTcacatcgtagccacctaacttgataacg
gctctccaaagcctacatttcaaagtaaagcatgcagacgttatcacgtcaaacaaggcataac
caaaagta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 582
Transcript exons: 28711690-28711729,28711832-28711965,28712103-28712510
CACATCGTAGCCACCTAACTTGATAACGGCTCTCCAAAGCTTGAGACAATTTAAGGGCTGTCCG
TAAAACTTTGGGGCTTTAAATTCCAGGAAATTCTCCTTGTTGAAGGCCTCCACTTCTTTAATAA
ACGCCTCTTGATCCTGTGGTGCCCCTGCTTCATCAACTTCCCTGGCCTCAGCATCACTCAACAA
CCATGTCTTCCACTTCTTAACACTTTCTTCAGGAACATGAGGACTCGACGGATCCCCCTTCAAA
GGATTTGATTCCCCAAGTGTTGTCTCCTCTTGACCGCCATCACTAGTAATCTTCTTTTCAGACT
GATCAACATCACCATTCCTCCCATCAACACTGTTCTGACCACCAACCTCTTCATTAGCCTCAAT
TTGATTAGCAATGGGAGCATCAGATAAATGAACATCACTATCCAAAGTATGAGTCGTATCCTCT
GGAACAGGGGACTTAGGTCTTTCAATAGAGTTTAGGTCTTTCTCTAGTTCTGAAGGCTCCTCTA
CAACACCTTTGGTACCAGACGGCACATCTTGCTCTTGCATTTCAGTATCCGCCATCATGAAGCT
AATTCT

Genomic sequence CACATCGTAGCCACCTAACTTGATAACGGCTCTCCAAAGCCTACATTTCAAAGTAAAGCATGCA
GACGTTATCACGTCAAACAAGGCATAACCAAAAGTATGGAATTTTCCAAGAATTAAAGCAACAC
TTCCAACAACTCACTTGAGACAATTTAAGGGCTGTCCGTAAAACTTTGGGGCTTTAAATTCCAG
GAAATTCTCCTTGTTGAAGGCCTCCACTTCTTTAATAAACGCCTCTTGATCCTGTGGTGCCCCT
GCTTCATCAACTTCCCTGGCCTGTATAAAAACGTGAACTCGTGATGAAATAGAGCCACTGTGAT
GACCACAGATCTCACAAAAAACAATATTCAACGCTTAACGCAAATGCAGGCAGACTAGTTGTCT
GAAATGTGACAGAAAAGTGCTCTCATCACCTCAGCATCACTCAACAACCATGTCTTCCACTTCT
TAACACTTTCTTCAGGAACATGAGGACTCGACGGATCCCCCTTCAAAGGATTTGATTCCCCAAG
TGTTGTCTCCTCTTGACCGCCATCACTAGTAATCTTCTTTTCAGACTGATCAACATCACCATTC
CTCCCATCAACACTGTTCTGACCACCAACCTCTTCATTAGCCTCAATTTGATTAGCAATGGGAG
CATCAGATAAATGAACATCACTATCCAAAGTATGAGTCGTATCCTCTGGAACAGGGGACTTAGG
TCTTTCAATAGAGTTTAGGTCTTTCTCTAGTTCTGAAGGCTCCTCTACAACACCTTTGGTACCA
GACGGCACATCTTGCTCTTGCATTTCAGTATCCGCCATCATGAAGCTAATTCT
Conservation Information
Conserved circRNAs NA
PMCS 0.222493525
Functional Information
Coding potential Y
Potential coding position 28712499-28711692(-)
Potential amino acid sequence MMADTEMQEQDVPSGTKGVVEEPSELEKDLNSIERPKSPVPEDTTHTLDSDVHLSDAPIANQIE
ANEEVGGQNSVDGRNGDVDQSEKKITSDGGQEETTLGESNPLKGDPSSPHVPEESVKKWKTWLL
SDAEAREVDEAGAPQDQEAFIKEVEAFNKENFLEFKAPKFYGQPLNCLKLWRAVIKLGGYDVRI
SFMMADTEMQEQDVPSGTKGVVEEPSELEKDLNSIERPKSPVPEDTTHTLDSDVHLSDAPIANQ
IEANEEVGGQNSVDGRNGDVDQSEKKITSDGGQEETTLGESNPLKGDPSSPHVPEESVKKWKTW
LLSDAEAREVDEAGAPQDQEAFIKEVEAFNKENFLEFKAPKFYGQPLNCLKLWRAVIKLGGYDV
RISFMMADTEMQEQDVPSGTKGVVEEPSELEKDLNSIERPKSPVPEDTTHTLDSDVHLSDAPIA
NQIEANEEVGGQNSVDGRNGDVDQSEKKITSDGGQEETTLGESNPLKGDPSSPHVPEESVKKWK
TWLLSDAEAREVDEAGAPQDQEAFIKEVEAFNKENFLEFKAPKFYGQPLNCLKLWRAVIKLGGY
DVRISFMMADTEMQEQDVPSGTKGVVEEPSELEKDLNSIERPKSPVPEDTTHTLDSDVHLSDAP
IANQIEANEEVGGQNSVDGRNGDVDQSEKKITSDGGQEETTLGESNPLKGDPSSPHVPEESVKK
WKTWLLSDAEAREVDEAGAPQDQEAFIKEVEAFNKENFLEFKAPKFYGQPLNCLKLWRAVIKLG
GYDV(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description response to drought stress
Other Information
References Liu et al., 2017;Zhang et al., 2019