Detail information of Os10g0521700_circ_g.8


General Information
CircRNA Name Os10g0521700_circ_g.8
ID in PlantcircBase osa_circ_007722
Alias NA
Organism Oryza sativa
Position chr10: 20197987-20198213  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os10g0521700
Parent gene annotation Similar to Shaggy-related protein kinase NtK-1 (EC 2.7.1.-). (Os
10t0521700-01)
Parent gene strand -
Alternative splicing Os10g0521700_circ_g.1 Os10g0521700_circ_g.2 Os10g0521700_circ_g.3 Os10g0521700_circ_g.4 Os10g0521700_circ_g.5 Os10g0521700_circ_g.6 Os10g0521700_circ_g.7 Os10g0521700_circ_g.9 Os10g0521700_circ_g.10 Os10g0521801_circ_g.1 Os10g0521801_circ_g.2 Os10g0521801_circ_g.3 Os10g0521801_circ_g.4
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-TC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAGATAACAGTAAGTTCGATACAAAATTATTCAATCAAGTATATCCTCGGGTCATGAACTTGA
CTAGAAAAAAACTGAGCTGCTAGAATGATTCTATACagccaaagcaggaaagagtcttgcagca
cagcatccattattaacccccaacccccataaaatgaagtacttgcattcaaatggaaatgctg
agttatgt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 227
Transcript exons: 20197987-20198213
AGCCAAAGCAGGAAAGAGTCTTGCAGCACAGCATCCATTATTAACCCCCAACCCCCATAAAATG
AAGTACTTGCATTCAAATGGAAATGCTGAGTTATGTTATTTATTTTTTGGTAATGGTGTGACTT
AAGATAACAGTAAGTTCGATACAAAATTATTCAATCAAGTATATCCTCGGGTCATGAACTTGAC
TAGAAAAAAACTGAGCTGCTAGAATGATTCTATAC

Genomic sequence AGCCAAAGCAGGAAAGAGTCTTGCAGCACAGCATCCATTATTAACCCCCAACCCCCATAAAATG
AAGTACTTGCATTCAAATGGAAATGCTGAGTTATGTTATTTATTTTTTGGTAATGGTGTGACTT
AAGATAACAGTAAGTTCGATACAAAATTATTCAATCAAGTATATCCTCGGGTCATGAACTTGAC
TAGAAAAAAACTGAGCTGCTAGAATGATTCTATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.357606461
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017