Detail information of Os10g0521700_circ_g.6


General Information
CircRNA Name Os10g0521700_circ_g.6
ID in PlantcircBase osa_circ_007720
Alias NA
Organism Oryza sativa
Position chr10: 20197906-20199180  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0521700
Parent gene annotation Similar to Shaggy-related protein kinase NtK-1 (EC 2.7.1.-). (Os
10t0521700-01)
Parent gene strand -
Alternative splicing Os10g0521700_circ_g.1 Os10g0521700_circ_g.2 Os10g0521700_circ_g.3 Os10g0521700_circ_g.4 Os10g0521700_circ_g.5 Os10g0521700_circ_g.7 Os10g0521700_circ_g.8 Os10g0521700_circ_g.9 Os10g0521700_circ_g.10 Os10g0521801_circ_g.1 Os10g0521801_circ_g.2 Os10g0521801_circ_g.3 Os10g0521801_circ_g.4
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0521700-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTCAAGCAGTTGCATTGTTTGGAGCTCTCTGTTCTTATATCTTTTATCTTGCAGAACCTTCTT
AATGGCAACAGTCTCTCCAGTTTCCAAGCACTTGGCctttattatttccaccagttgatcaaca
ccactttctccagggaacagaggctgcaattgtccatattcggaaaaaagatcagccaaagcag
gaaagagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTATTATTTCCACCAGTTGATCAACACCACTTTCTCCAGGGAACAGAGGCTGCAATTGTCCA
TATTCGGAAAAAAGATCAGCCAAAGCAGGAAAGAGTCTTGCAGCACAGCATCCATTATTAACCC
CCAACCCCCATAAAATGAAGTACTTGCATTCAAATGGAAATGCTGAGTTATGTTATTTATTTTT
TGGTAATGGTGTGACTTAAGATAACAGTAAGTTCGATACAAAATTATTCAATCAAGTATATCCT
CGGGTCATGAACTTGACTAGAAAAAAACTGAGCTGCTAGAATGATTCTATACCTGACCAATCAG
AAGCTCAGCTAGTACACAACCAACAGACCAGATATCAATTGCTGTGGTATACTCTGTAGCTCCA
AATATTAGTTCAGGAGCCCTATAATACCGCGAGCAAATGTATGATATGTTAGGTTCACCAGGAA
CCTGAAATGGAGTGTCTGCATTGTCAAATACATGTGCAACACAGAATCAACATGCTAGCAGGAC
AAGAAGCATACCAATTTCTTAGCACTTCCAAAATCACAAAGCTTCAGTTGATGTGTATGAGGAT
TGACCTGAAAAATCGATCAACTTGCAATGAGACAATTGCTTGTACAGCAGGTTTACTTATATCA
CAACACATAAACAGCTGAAAATATTGCAGGCAATCATGCTTTTGCACAAGCTGCAAATGCATGT
TTCAATCTTAAACTCCATCATCTGTTTACAAGTACCCAAATAGTAAAAAAGGGAAAAGAACACT
TGCAAAGCATGCCCTGAGGAGGGGTGCCTGATAAAAATGAGTCTCATGATACATACCAGTAGAT
TTTGAGGTTTAATATCTCGATGGCAGACACCAACAACACGATGGATATATGCAAGGGCACGGCA
CATCTATGAAAAATAGTAAAACACATTAGAACAAATAATTTCTTTAGAATCATGGATTTAACAG
TTTGAAATGATCTACAAAGCTAAAATTATAACTTATACAGACCTGATATGCATACAGCTTAACA
TGCAATATGGGCACACGCTGGTTCATCCGATTGTAGTATTTAGCAACACGATAAACTGTCTCTG
AGACATATTCAAGTACAAGGTTGAGGTAAACTTCACCCCTCTCAGTCGTCGAAAAGAAGTGATG
CTTTAGCTGGACCACATTAGGATGGTCAAGCAGTTGCATTGTTTGGAGCTCTCTGTTCTTATAT
CTTTTATCTTGCAGAACCTTCTTAATGGCAACAGTCTCTCCAGTTTCCAAGCACTTGGC
Conservation Information
Conserved circRNAs NA
PMCS 0.186601196
Functional Information
Coding potential Y
Potential coding position 20199080-20198234(+)
20199098-20197908(-)
Potential amino acid sequence MVKQLHCLELSVLISFILQNLLNGNSLSSFQALGLYYFHQLINTTFSREQRLTNQKLS*(+)
MQLLDHPNVVQLKHHFFSTTERGEVYLNLVLEYVSETVYRVAKYYNRMNQRVPILHVKLYAYQM
CRALAYIHRVVGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKKLVPGEPNISYICSRYYRAPELI
FGATEYTTAIDIWSVGCVLAELLIGQPLFPGESGVDQLVEIIKAKCLETGETVAIKKVLQDKRY
KNRELQTMQLLDHPNVVQLKHHFFSTTERGEVYLNLVLEYVSETVYRVAKYYNRMNQRVPILHV
KLYAYQMCRALAYIHRVVGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKKLVPGEPNISYICSRY
YRAPELIFGATEYTTAIDIWSVGCVLAELLIGQPLFPGESGVDQLVEIIKAKCLETGETVAIKK
VLQDKRYKNRELQTMQLLDHPNVVQLKHHFFSTTERGEVYLNLVLEYVSETVYRVAKYYNRMNQ
RVPILHVKLYAYQMCRALAYIHRVVGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKKLVPGEPNI
SYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELLIGQPLFPGESGVDQLVEIIKAKCLETG
ETVAIKKVLQDKRYKNRELQTMQLLDHPNVVQLKHHFFSTTERGEVYLNLVLEYVSETVYRVAK
YYNRMNQRVPILHVKLYAYQMCRALAYIHRVVGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKKL
VPGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELLIGQPLFPGESGVDQLVEIIK
(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017