Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os10g0521700_circ_g.6 |
ID in PlantcircBase | osa_circ_007720 |
Alias | NA |
Organism | Oryza sativa |
Position | chr10: 20197906-20199180 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os10g0521700 |
Parent gene annotation |
Similar to Shaggy-related protein kinase NtK-1 (EC 2.7.1.-). (Os 10t0521700-01) |
Parent gene strand | - |
Alternative splicing | Os10g0521700_circ_g.1 Os10g0521700_circ_g.2 Os10g0521700_circ_g.3 Os10g0521700_circ_g.4 Os10g0521700_circ_g.5 Os10g0521700_circ_g.7 Os10g0521700_circ_g.8 Os10g0521700_circ_g.9 Os10g0521700_circ_g.10 Os10g0521801_circ_g.1 Os10g0521801_circ_g.2 Os10g0521801_circ_g.3 Os10g0521801_circ_g.4 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os10t0521700-01:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.186601196 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
20199080-20198234(+) 20199098-20197908(-) |
Potential amino acid sequence |
MVKQLHCLELSVLISFILQNLLNGNSLSSFQALGLYYFHQLINTTFSREQRLTNQKLS*(+) MQLLDHPNVVQLKHHFFSTTERGEVYLNLVLEYVSETVYRVAKYYNRMNQRVPILHVKLYAYQM CRALAYIHRVVGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKKLVPGEPNISYICSRYYRAPELI FGATEYTTAIDIWSVGCVLAELLIGQPLFPGESGVDQLVEIIKAKCLETGETVAIKKVLQDKRY KNRELQTMQLLDHPNVVQLKHHFFSTTERGEVYLNLVLEYVSETVYRVAKYYNRMNQRVPILHV KLYAYQMCRALAYIHRVVGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKKLVPGEPNISYICSRY YRAPELIFGATEYTTAIDIWSVGCVLAELLIGQPLFPGESGVDQLVEIIKAKCLETGETVAIKK VLQDKRYKNRELQTMQLLDHPNVVQLKHHFFSTTERGEVYLNLVLEYVSETVYRVAKYYNRMNQ RVPILHVKLYAYQMCRALAYIHRVVGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKKLVPGEPNI SYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELLIGQPLFPGESGVDQLVEIIKAKCLETG ETVAIKKVLQDKRYKNRELQTMQLLDHPNVVQLKHHFFSTTERGEVYLNLVLEYVSETVYRVAK YYNRMNQRVPILHVKLYAYQMCRALAYIHRVVGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKKL VPGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELLIGQPLFPGESGVDQLVEIIK (-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |