Detail information of Mt_circ_igg.5


General Information
CircRNA Name Mt_circ_igg.5
ID in PlantcircBase ath_circ_046408
Alias Mt:40483-41982
Organism Arabidpsis thaliana
Position chrMt: 40483-41982  JBrowse»
Reference genome TAIR10.38
Type   igg-circRNA
Identification method find_circ; CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Mt_circ_igg.1 ATMG00020_circ_g.1 ATMG00020_circ_g.2 ATMG00020_circ_g.3 ATMG00020_circ_g.4 ATMG00020_circ_g.5 ATMG00020_circ_g.6 ATMG00020_circ_g.7 ATMG00020_circ_g.8 ATMG00020_circ_g.9 ATMG00020_circ_g.10 ATMG00020_circ_g.11 ATMG00020_circ_g.12 ATMG00020_circ_g.13 Mt_circ_igg.14 ATMG00020_circ_g.15 Mt_circ_ag.1 ATMG00020_circ_g.2 Mt_circ_ag.3 ATMG00020_circ_g.4 Mt_circ_igg.5 Mt_circ_igg.6 Mt_circ_igg.7 Mt_circ_ig.1 Mt_circ_igg.2 Mt_circ_igg.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_igg.6 Mt_circ_ig.7 Mt_circ_igg.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 Mt_circ_igg.12 Mt_circ_ig.13 Mt_circ_ig.14 Mt_circ_igg.15 Mt_circ_igg.16 ATMG00030_circ_g.1 ATMG00030_circ_g.2 ATMG00030_circ_g.3 Mt_circ_ig.4 ATMG00060_circ_g.1 ATMG00060_circ_g.2 ATMG00060_circ_g.3 Mt_circ_ag.4 Mt_circ_ag.5 Mt_circ_ig.6 Mt_circ_ig.7 Mt_circ_ig.8 Mt_circ_ig.9 Mt_circ_ig.10 ATMG00070_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 ATMG00090_circ_g.1 ATMG00090_circ_g.2 ATMG00090_circ_g.3 ATMG00090_circ_g.4 ATMG00090_circ_g.5 ATMG00090_circ_g.6 Mt_circ_igg.7 ATMG00090_circ_g.8 ATMG00090_circ_g.9 ATMG00090_circ_g.10 ATMG00090_circ_g.11 Mt_circ_igg.12 Mt_circ_igg.13 Mt_circ_ag.14 ATMG00110_circ_g.1 ATMG00110_circ_g.2 Mt_circ_ig.3 Mt_circ_ig.4 ATMG00160_circ_g.1 ATMG00160_circ_g.2 ATMG00160_circ_g.3 ATMG00160_circ_g.4 Mt_circ_igg.5 Mt_circ_ig.6 ATMG00180_circ_g.1 ATMG00180_circ_g.2 ATMG00180_circ_g.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_ig.6 Mt_circ_ig.7 Mt_circ_ig.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_igg.11 Mt_circ_igg.12 Mt_circ_igg.13 Mt_circ_igg.14 Mt_circ_igg.15 ATMG00480_circ_g.1 ATMG00510_circ_g.1 ATMG00510_circ_g.2 ATMG00510_circ_g.3 ATMG00510_circ_g.4 ATMG00510_circ_g.5 ATMG00510_circ_g.6 ATMG00510_circ_g.7 ATMG00510_circ_g.8 ATMG00510_circ_g.9 ATMG00510_circ_g.10 Mt_circ_ag.11 ATMG00513_circ_g.1 ATMG00513_circ_g.2 ATMG00580_circ_g.1 ATMG00580_circ_g.2 ATMG00580_circ_g.3 ATMG00580_circ_g.4 ATMG00580_circ_g.5 ATMG00580_circ_g.6 ATMG00580_circ_g.7 ATMG00580_circ_g.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 ATMG00640_circ_g.1 Mt_circ_ig.2 Mt_circ_igg.3 Mt_circ_igg.4 Mt_circ_igg.5 Mt_circ_igg.6 Mt_circ_ig.7 Mt_circ_ig.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 Mt_circ_ig.12 Mt_circ_ig.13 Mt_circ_ig.14 Mt_circ_ig.15 Mt_circ_ig.16 Mt_circ_ig.17 Mt_circ_ig.18 Mt_circ_ig.19 Mt_circ_ig.20 Mt_circ_ig.21 Mt_circ_ig.22 Mt_circ_ig.23 Mt_circ_ig.24 Mt_circ_ig.25 Mt_circ_ig.26 Mt_circ_ig.27 Mt_circ_ig.28 ATMG00660_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 ATMG00670_circ_g.1 Mt_circ_ig.2 Mt_circ_igg.3 Mt_circ_igg.4 Mt_circ_igg.5 Mt_circ_ig.6 ATMG00780_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_igg.6 Mt_circ_igg.7 ATMG01060_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_ig.6 Mt_circ_ig.7 Mt_circ_igg.8 Mt_circ_igg.9 Mt_circ_igg.10 Mt_circ_igg.11 Mt_circ_igg.12 Mt_circ_ig.13 Mt_circ_ig.14 Mt_circ_ig.15 Mt_circ_ig.16 Mt_circ_ig.17 Mt_circ_ig.18 Mt_circ_ig.19 Mt_circ_ig.20 Mt_circ_ig.21 Mt_circ_ig.22 Mt_circ_igg.23 Mt_circ_igg.24 Mt_circ_ig.25 ATMG01320_circ_g.1 ATMG01320_circ_g.2 ATMG01320_circ_g.3 Mt_circ_ig.4 Mt_circ_igg.5 Mt_circ_ig.6 Mt_circ_igg.7 Mt_circ_igg.8 ATMG01360_circ_g.1 ATMG01360_circ_g.2 ATMG01360_circ_g.3 ATMG01360_circ_g.4 ATMG01360_circ_g.5 ATMG01360_circ_g.6 ATMG01360_circ_g.7 Mt_circ_igg.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 Mt_circ_igg.12 Mt_circ_igg.13 Mt_circ_ig.14 ATMG01380_circ_g.1 Mt_circ_igg.2 Mt_circ_igg.3 ATMG01380_circ_g.4 Mt_circ_igg.5 Mt_circ_igg.6 ATMG01390_circ_g.1 ATMG01390_circ_g.2 ATMG01390_circ_g.3 ATMG01390_circ_g.4 ATMG01390_circ_g.5 ATMG01390_circ_g.6 ATMG01390_circ_g.7 ATMG01390_circ_g.8 ATMG01390_circ_g.9 ATMG01390_circ_g.10 ATMG01390_circ_g.11 ATMG01390_circ_g.12 ATMG01390_circ_g.13 ATMG01390_circ_g.14 ATMG01390_circ_g.15 ATMG01390_circ_g.16 ATMG01390_circ_g.17
Support reads 1/2/3/1
Tissues seedling;root;leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAGCCAGAGTGGGGCTCAACAGTCGGCCTATGTTTCCGGGCGCACGCGTAAAGGCATGATTAG
TTCCACAAATCTCACTGCACTGACCATAGTAAACTCcttactcttaaatttccgcttaagcttc
cccggtttgggggattaattgattggatacccgagaaccataatctttcctaggaacagcttct
acgacgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTACTCTTAAATTTCCGCTTAAGCTTCCCCGGTTTGGGGGATTAATTGATTGGATACCCGAGA
ACCATAATCTTTCCTAGGAACAGCTTCTACGACGATAGATAGGGGTCAGCTTTCTTTGGCATCT
ATGCCCCCTGCCCTCCAAACAGTATGGGAGCCTTTCAGCTCGTACTGCTCACACTCCTAGATCT
TCACGGCACCTCCTCCACCATAGTGTGAGCTGCTCCCAGCGGAGAAAAGCAAGGCCTACTTCCT
AATTAGCTTTCAACAACGTCAACAACACCACGAAAAAAGTAAACAATGGTTGCCCACTAATCTG
ATCATAGGTGAAATCCAATCCCTTCGCTTCGCGCCAGGCTTTGAAACCGTAAGTCAGGCTCCTT
TCGCCTCTCCTTTCAGTCGAGTCACGTCAGTACCTCTCAGAAGCGAGAAAGCGAGCAGCAAGCT
GAAAAAAGGAGAAAGTGGTTTTATAAAGCAAAATAAGCTAAGGGGGCTGGCTAGGAATCGCAAG
AATTGAGAAGGGTGGGAAAGACAGGTTCGGTAATGGCCGGATTAGCAGGAGGAAGGTCTTGAAG
AGCCTGAAACAAAGAAAGGTGTACATAAAAAAAGAGGCTGGTTATGGCCTTTACTTGATAGGAC
TCCTTTCCCATCCCGGGAAGAGGGGATAAAAAAAACCTTGCGGAAGCCCTGCCCACCCTTCCGG
ATCCCTCATATTTATGATTCCAGGCTTCCCGGACTCGTAATAGACGGCTAAGAACAAGAAGAGG
GTCAGTAGTCTCTGCCGTTGCAGGTCCTTCTCCTTCCGCTGAGACGGCCCTCTTTTTTTGTTTG
TTCACCGCGGCACGAAATCGAAATCATGAAGAAGCTGGAATAACTCAGAAAGAGAGTGGCGCCT
AGCCGTTGAGAGCGTCTATTATCTTTGTAGAGGAACAGTACGATCTTGGACTGGCCCCCTTCGC
ATGACCTAGAAAGATCAAGAAGTCCATGCTACTATAAGGCCTCTAAACTCCTCCCTCAGGACAC
TATTGCCCATGGGGACGGGGTAGCCCCGACTTCCATAGGTCCTTGGTTCGACCTCCTAATGAGA
ATTGAGGTCCTTGCGCGGGCGTCTCATCCCTAAGACTTGCTTGCTCTGTATGGAGTGCCCTGTG
GTTCCTCGAGTGCCAGCCGCAGAGAGGAATGCCATCAACTAGGGCGCTATTGGCCACTAACCAC
TCGCTCGCCAGCCGCTCGGGCTCCGCGTTTCAAGTTCGTTATCCTAACCGTCCCCTCTGCTCCA
CCGGGTGCCTGGCCCTTTTCTTCTATCTTATCTACTACCTTGCTCCTCGGCTCCCTACAGCTCC
AGCCGCTCACTGTAATAGCTTGCTTCTCGGGTGGCTCGCACCCCGGGTGGTGCGGCTGAGCCAG
AGTGGGGCTCAACAGTCGGCCTATGTTTCCGGGCGCACGCGTAAAGGCATGATTAGTTCCACAA
ATCTCACTGCACTGACCATAGTAAACTC
Conservation Information
Conserved circRNAs NA
PMCS 0.163824594
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020