Detail information of Mt_circ_ag.14


General Information
CircRNA Name Mt_circ_ag.14
ID in PlantcircBase ath_circ_046403
Alias Mt:28673-204275
Organism Arabidpsis thaliana
Position chrMt: 28673-204275  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ; CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Mt_circ_igg.1 ATMG00020_circ_g.1 ATMG00020_circ_g.2 ATMG00020_circ_g.3 ATMG00020_circ_g.4 ATMG00020_circ_g.5 ATMG00020_circ_g.6 ATMG00020_circ_g.7 ATMG00020_circ_g.8 ATMG00020_circ_g.9 ATMG00020_circ_g.10 ATMG00020_circ_g.11 ATMG00020_circ_g.12 ATMG00020_circ_g.13 Mt_circ_igg.14 ATMG00020_circ_g.15 Mt_circ_ag.1 ATMG00020_circ_g.2 Mt_circ_ag.3 ATMG00020_circ_g.4 Mt_circ_igg.5 Mt_circ_igg.6 Mt_circ_igg.7 Mt_circ_ig.1 Mt_circ_igg.2 Mt_circ_igg.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_igg.6 Mt_circ_ig.7 Mt_circ_igg.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 Mt_circ_igg.12 Mt_circ_ig.13 Mt_circ_ig.14 Mt_circ_igg.15 Mt_circ_igg.16 ATMG00030_circ_g.1 ATMG00030_circ_g.2 ATMG00030_circ_g.3 Mt_circ_ig.4 ATMG00060_circ_g.1 ATMG00060_circ_g.2 ATMG00060_circ_g.3 Mt_circ_ag.4 Mt_circ_ag.5 Mt_circ_ig.6 Mt_circ_ig.7 Mt_circ_ig.8 Mt_circ_ig.9 Mt_circ_ig.10 ATMG00070_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 ATMG00090_circ_g.1 ATMG00090_circ_g.2 ATMG00090_circ_g.3 ATMG00090_circ_g.4 ATMG00090_circ_g.5 ATMG00090_circ_g.6 Mt_circ_igg.7 ATMG00090_circ_g.8 ATMG00090_circ_g.9 ATMG00090_circ_g.10 ATMG00090_circ_g.11 Mt_circ_igg.12 Mt_circ_igg.13 ATMG00110_circ_g.1 ATMG00110_circ_g.2 Mt_circ_ig.3 Mt_circ_ig.4 Mt_circ_igg.5 ATMG00160_circ_g.1 ATMG00160_circ_g.2 ATMG00160_circ_g.3 ATMG00160_circ_g.4 Mt_circ_igg.5 Mt_circ_ig.6 ATMG00180_circ_g.1 ATMG00180_circ_g.2 ATMG00180_circ_g.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_ig.6 Mt_circ_ig.7 Mt_circ_ig.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_igg.11 Mt_circ_igg.12 Mt_circ_igg.13 Mt_circ_igg.14 Mt_circ_igg.15 ATMG00480_circ_g.1 ATMG00510_circ_g.1 ATMG00510_circ_g.2 ATMG00510_circ_g.3 ATMG00510_circ_g.4 ATMG00510_circ_g.5 ATMG00510_circ_g.6 ATMG00510_circ_g.7 ATMG00510_circ_g.8 ATMG00510_circ_g.9 ATMG00510_circ_g.10 Mt_circ_ag.11 ATMG00513_circ_g.1 ATMG00513_circ_g.2 ATMG00580_circ_g.1 ATMG00580_circ_g.2 ATMG00580_circ_g.3 ATMG00580_circ_g.4 ATMG00580_circ_g.5 ATMG00580_circ_g.6 ATMG00580_circ_g.7 ATMG00580_circ_g.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 ATMG00640_circ_g.1 Mt_circ_ig.2 Mt_circ_igg.3 Mt_circ_igg.4 Mt_circ_igg.5 Mt_circ_igg.6 Mt_circ_ig.7 Mt_circ_ig.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 Mt_circ_ig.12 Mt_circ_ig.13 Mt_circ_ig.14 Mt_circ_ig.15 Mt_circ_ig.16 Mt_circ_ig.17 Mt_circ_ig.18 Mt_circ_ig.19 Mt_circ_ig.20 Mt_circ_ig.21 Mt_circ_ig.22 Mt_circ_ig.23 Mt_circ_ig.24 Mt_circ_ig.25 Mt_circ_ig.26 Mt_circ_ig.27 Mt_circ_ig.28 ATMG00660_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 ATMG00670_circ_g.1 Mt_circ_ig.2 Mt_circ_igg.3 Mt_circ_igg.4 Mt_circ_igg.5 Mt_circ_ig.6 ATMG00780_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_igg.6 Mt_circ_igg.7 ATMG01060_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_ig.6 Mt_circ_ig.7 Mt_circ_igg.8 Mt_circ_igg.9 Mt_circ_igg.10 Mt_circ_igg.11 Mt_circ_igg.12 Mt_circ_ig.13 Mt_circ_ig.14 Mt_circ_ig.15 Mt_circ_ig.16 Mt_circ_ig.17 Mt_circ_ig.18 Mt_circ_ig.19 Mt_circ_ig.20 Mt_circ_ig.21 Mt_circ_ig.22 Mt_circ_igg.23 Mt_circ_igg.24 Mt_circ_ig.25 ATMG01320_circ_g.1 ATMG01320_circ_g.2 ATMG01320_circ_g.3 Mt_circ_ig.4 Mt_circ_igg.5 Mt_circ_ig.6 Mt_circ_igg.7 Mt_circ_igg.8 ATMG01360_circ_g.1 ATMG01360_circ_g.2 ATMG01360_circ_g.3 ATMG01360_circ_g.4 ATMG01360_circ_g.5 ATMG01360_circ_g.6 ATMG01360_circ_g.7 Mt_circ_igg.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 Mt_circ_igg.12 Mt_circ_igg.13 Mt_circ_ig.14 ATMG01380_circ_g.1 Mt_circ_igg.2 Mt_circ_igg.3 ATMG01380_circ_g.4 Mt_circ_igg.5 Mt_circ_igg.6 ATMG01390_circ_g.1 ATMG01390_circ_g.2 ATMG01390_circ_g.3 ATMG01390_circ_g.4 ATMG01390_circ_g.5 ATMG01390_circ_g.6 ATMG01390_circ_g.7 ATMG01390_circ_g.8 ATMG01390_circ_g.9 ATMG01390_circ_g.10 ATMG01390_circ_g.11 ATMG01390_circ_g.12 ATMG01390_circ_g.13 ATMG01390_circ_g.14 ATMG01390_circ_g.15 ATMG01390_circ_g.16 ATMG01390_circ_g.17
Support reads 2
Tissues root
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTTTTGACTTTATGGATTTCTGTCCCTTTTTTCTTCCCGGTACAATATTTGTTCTCGAAAGT
CTGAGTTTCCGTGTACTCTCCAAATTTATGACCAACttgaatctgaactacgattttttccaag
tcttaccgaaatcggatttccttttcgtgccatattttttgactttatggatttctgtcccttt
tttcttcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1019
Transcript exons: 28673-28757,135714-135820,140723-140893,189275-189330,18
9416-189549,190535-190761,203116-203354
TTGAATCTGAACTACGATTTTTTCCAAGTCTTACCGAAATCGGATTTCCTTTTCGTGCCATATT
TTTTGACTTTATGGATTTCTGGGAAACTCTCACGTACAGTTTGTTTTTTTTGGGGGGGGCAGGA
GCCCGACAGGGTCCCCCACTGACTTGGCCCGGGCCTAAGTTAAAGTGAAGTGGTGGGCCTACCC
CTTTGGCCAAGTATCCTACAAAGAGACTCCCGAGAGCCAGAAGTATTAAAGGAATGGCCATAGG
AATGGGCGCATCATGACATCGTGAGATGTCTCGCCCGAACGAATTAGTTGGTACTAGAAATGTT
AGAAAAAGTAAACGAAAAGAGTAATAAGAAGTGAAAAGGACAGGACAAGCTCGACCGAACACCT
GAAGTCCTTGATATTTAGGTTAGGGAGACACGCGCAGGCCCCGCTGCTGCGGCAAGGCGCGGCA
GCCCTCTGACCCTGCGAAAAAGAGCTTCCCGTCGGTTCAGGCACCATTTTTTTGAATAGGTGGG
ACTTCGGTGATAGGTTGTTTTTGATCCCATGAGGGATCTAGCTTCGCCAAAAGGCCTCATCTCT
GGAAGCCCGGCTCGCGAGGCGTCCCTCCCGCTGTAGGGTTCCAAAACTCGCCTCGCTCTTGGGA
CATGCTATCTTTCCCCTCTTTATTCTCAAGTAAAGGGTGAGTCCCATGCGTCAGTTTGTGGATC
GCGGTCTCACGCACTAATCCCTACAGGCGGGTGCCCGTAGTAGGCCGGCCGCCCTACCTAAACC
AATCATCATATCCCTAGTTACTAATTCCTTTCCTCTTCCAACGCTCTCTTTCTTCTGGACGAGG
TTACCCTATCTCGACTTACTTATGCTATCGGGAATGGTGTTGCACCCATAGTAGTTGTTCTCTT
CTCATCGGTACCTCTCATCCATCTATTTCATAAGAGAATAAAAGTTGAGCCAGTTGAAAGACTA
GTCGAGAAGCCCTATTCAGAAAGGTAGATGAGAGCTTGCGGAGAAGGCAAAGTTCTCAT

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.337043865
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR8171 ath-miR838
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020