Detail information of Mt_circ_igg.7


General Information
CircRNA Name Mt_circ_igg.7
ID in PlantcircBase ath_circ_046396
Alias NA
Organism Arabidpsis thaliana
Position chrMt: 26977-28833  JBrowse»
Reference genome TAIR10.38
Type   igg-circRNA
Identification method circRNA_finder
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Mt_circ_igg.1 ATMG00020_circ_g.1 ATMG00020_circ_g.2 ATMG00020_circ_g.3 ATMG00020_circ_g.4 ATMG00020_circ_g.5 ATMG00020_circ_g.6 ATMG00020_circ_g.7 ATMG00020_circ_g.8 ATMG00020_circ_g.9 ATMG00020_circ_g.10 ATMG00020_circ_g.11 ATMG00020_circ_g.12 ATMG00020_circ_g.13 Mt_circ_igg.14 ATMG00020_circ_g.15 Mt_circ_ag.1 ATMG00020_circ_g.2 Mt_circ_ag.3 ATMG00020_circ_g.4 Mt_circ_igg.5 Mt_circ_igg.6 Mt_circ_igg.7 Mt_circ_ig.1 Mt_circ_igg.2 Mt_circ_igg.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_igg.6 Mt_circ_ig.7 Mt_circ_igg.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 Mt_circ_igg.12 Mt_circ_ig.13 Mt_circ_ig.14 Mt_circ_igg.15 Mt_circ_igg.16 ATMG00030_circ_g.1 ATMG00030_circ_g.2 ATMG00030_circ_g.3 Mt_circ_ig.4 ATMG00060_circ_g.1 ATMG00060_circ_g.2 ATMG00060_circ_g.3 Mt_circ_ag.4 Mt_circ_ag.5 Mt_circ_ig.6 Mt_circ_ig.7 Mt_circ_ig.8 Mt_circ_ig.9 Mt_circ_ig.10 ATMG00070_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 ATMG00090_circ_g.1 ATMG00090_circ_g.2 ATMG00090_circ_g.3 ATMG00090_circ_g.4 ATMG00090_circ_g.5 ATMG00090_circ_g.6 ATMG00090_circ_g.8 ATMG00090_circ_g.9 ATMG00090_circ_g.10 ATMG00090_circ_g.11 Mt_circ_igg.12 Mt_circ_igg.13 Mt_circ_ag.14 ATMG00110_circ_g.1 ATMG00110_circ_g.2 Mt_circ_ig.3 Mt_circ_ig.4 Mt_circ_igg.5 ATMG00160_circ_g.1 ATMG00160_circ_g.2 ATMG00160_circ_g.3 ATMG00160_circ_g.4 Mt_circ_igg.5 Mt_circ_ig.6 ATMG00180_circ_g.1 ATMG00180_circ_g.2 ATMG00180_circ_g.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_ig.6 Mt_circ_ig.7 Mt_circ_ig.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_igg.11 Mt_circ_igg.12 Mt_circ_igg.13 Mt_circ_igg.14 Mt_circ_igg.15 ATMG00480_circ_g.1 ATMG00510_circ_g.1 ATMG00510_circ_g.2 ATMG00510_circ_g.3 ATMG00510_circ_g.4 ATMG00510_circ_g.5 ATMG00510_circ_g.6 ATMG00510_circ_g.7 ATMG00510_circ_g.8 ATMG00510_circ_g.9 ATMG00510_circ_g.10 Mt_circ_ag.11 ATMG00513_circ_g.1 ATMG00513_circ_g.2 ATMG00580_circ_g.1 ATMG00580_circ_g.2 ATMG00580_circ_g.3 ATMG00580_circ_g.4 ATMG00580_circ_g.5 ATMG00580_circ_g.6 ATMG00580_circ_g.7 ATMG00580_circ_g.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 ATMG00640_circ_g.1 Mt_circ_ig.2 Mt_circ_igg.3 Mt_circ_igg.4 Mt_circ_igg.5 Mt_circ_igg.6 Mt_circ_ig.7 Mt_circ_ig.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 Mt_circ_ig.12 Mt_circ_ig.13 Mt_circ_ig.14 Mt_circ_ig.15 Mt_circ_ig.16 Mt_circ_ig.17 Mt_circ_ig.18 Mt_circ_ig.19 Mt_circ_ig.20 Mt_circ_ig.21 Mt_circ_ig.22 Mt_circ_ig.23 Mt_circ_ig.24 Mt_circ_ig.25 Mt_circ_ig.26 Mt_circ_ig.27 Mt_circ_ig.28 ATMG00660_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 ATMG00670_circ_g.1 Mt_circ_ig.2 Mt_circ_igg.3 Mt_circ_igg.4 Mt_circ_igg.5 Mt_circ_ig.6 ATMG00780_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_igg.6 Mt_circ_igg.7 ATMG01060_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_ig.6 Mt_circ_ig.7 Mt_circ_igg.8 Mt_circ_igg.9 Mt_circ_igg.10 Mt_circ_igg.11 Mt_circ_igg.12 Mt_circ_ig.13 Mt_circ_ig.14 Mt_circ_ig.15 Mt_circ_ig.16 Mt_circ_ig.17 Mt_circ_ig.18 Mt_circ_ig.19 Mt_circ_ig.20 Mt_circ_ig.21 Mt_circ_ig.22 Mt_circ_igg.23 Mt_circ_igg.24 Mt_circ_ig.25 ATMG01320_circ_g.1 ATMG01320_circ_g.2 ATMG01320_circ_g.3 Mt_circ_ig.4 Mt_circ_igg.5 Mt_circ_ig.6 Mt_circ_igg.7 Mt_circ_igg.8 ATMG01360_circ_g.1 ATMG01360_circ_g.2 ATMG01360_circ_g.3 ATMG01360_circ_g.4 ATMG01360_circ_g.5 ATMG01360_circ_g.6 ATMG01360_circ_g.7 Mt_circ_igg.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 Mt_circ_igg.12 Mt_circ_igg.13 Mt_circ_ig.14 ATMG01380_circ_g.1 Mt_circ_igg.2 Mt_circ_igg.3 ATMG01380_circ_g.4 Mt_circ_igg.5 Mt_circ_igg.6 ATMG01390_circ_g.1 ATMG01390_circ_g.2 ATMG01390_circ_g.3 ATMG01390_circ_g.4 ATMG01390_circ_g.5 ATMG01390_circ_g.6 ATMG01390_circ_g.7 ATMG01390_circ_g.8 ATMG01390_circ_g.9 ATMG01390_circ_g.10 ATMG01390_circ_g.11 ATMG01390_circ_g.12 ATMG01390_circ_g.13 ATMG01390_circ_g.14 ATMG01390_circ_g.15 ATMG01390_circ_g.16 ATMG01390_circ_g.17
Support reads 2
Tissues whole_plant
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTTTTGACTTTATGGATTTCTGTCCCTTTTTTCTTCCCGGTACAATATTTGTTCTCGAAAGT
CTGAGTTTCCGTGTACTCTCCAAATTTATGACCAACctaccgagacgaaagccgaaggtgagtc
tcgtaggtggacgtatcgaaccgaaataagatctcagattgacatcttgatacacaaatttacc
ataataat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTACCGAGACGAAAGCCGAAGGTGAGTCTCGTAGGTGGACGTATCGAACCGAAATAAGATCTCA
GATTGACATCTTGATACACAAATTTACCATAATAATAAATAGAGTCAATAGTGACCCCGCCGTA
GAAAGAGCCGCTTATTTTTTGCTTGATAGGGGGGCTTCCATTCACCAACAAAGACTAAAAGTGC
TCTCCGAACCGTGCTGGATAGTCACCCATCACACGGCTCTCAAACCCAACCTGTGGTGGATCCC
GGGAGACAAAGTAAAAGCGCTTGATCCTTTGCCCCATACTTTGAGATGCTCCTCCCCGCGCAGC
ACGCTGCTCGTGAGAGGCTTAGCTTTAAGTTTAAGCTGCTATCGTTCGGTTCGGATAAGTCAAG
TCCCTTTGATCGGTTCGCTCAGGTGGTCTTATCTTCCCTAACGTTCAGAGTCGTTTTGGTTTGA
GAAAGGAGCACCGGCCGAGCGCCCTGAATGAATAAGAAATGGACAGGAGAGAGAATCAATGATT
CTTATTCAACCGAGTTGAAGCTAGCAACATGTTGATTACACACCGGAGGTTAGTAAGAACTGAG
GGCAATGCCCTCCTAACCTAAGTAGGCTACCCGCGCTGCGAAGCAACTGGTACTTGATTGGGGC
GGGGGGCGGTTTGGTTTCGTGCAAGGCCCTCGCAACAGGAAGAGGCAGTTGTCATTAACCTTTC
GCCTTTATTGATATAAAACAAGCTTACTTACCGGCAACAAGCACCTTTTTTTCTCAAAGTAAAG
TTTCTCGCTTGTTTCTTTAGAAAGATTGCAGCCTTAGCGAAACAACTTATCCTTTTCTACGAAT
CTTCCCTTTATTGAGCAAAATTCTATCTATATTTATTCCCGGAATATTTTCTATTTCAATTCTA
TCATTTGTTTGACAGCTTAAACTAGGCTTCATTTTAGATAGGTTTTCGGTCTCTTAATCAAAAT
CGGTCAGGGGTGCCGTCGGAACGGTCGGTGGCTGCTTAGTCTCATCCGAGAGTCTAATCTCTTT
GTACTGCTTTTTTTCAAAGAAAAAAAAAGAAGAAAGGGGTCGATTTAGGCTCCTTCCCTTCCAC
TGCATAGCTACGCTAACAGGTACTACGAGCCCTCTGTCCCACACATCTAACCAGCTCGCGTGGT
TCACCGGTTCCACCGAAAACTCTCATTTGTTAAAACGGAGCATAGTGCGCTTTAGGCGCCGAGC
GAGAAACCTCTCTTCTTTCGTTTCGGTTTATTCACTATCTGAAACTTAGCACTTGTTTGATTTT
TCTTATTGGGCGGCGGCGTTCTTTTTTGAAGTCTATCCGAACCGAATTAGCACTTCTCAGATCA
GACTAGGCCTCCCCCGCAGAGCTGGGCGCCGGGGACCTGGATGCGCTAGCGATCGGCGCATAGG
GGGGGTTAGTTGCCCGGGTTTCTCGGCCTGGTATCCTACACCTCGCGTTAATGATATCTACATT
CAACTGTGCCCCGGAGACACGGTCGAAGCACGCCCATCCAATGTGCTTCTTTCACGACATGCTC
TGGTTCCGGGTGTTTTCCAGTGGTCTTCTAGCGTTAGAAGAAGTCGTGTCCGTCCCGGACATCT
GCAACGTCCTCCCACGCTTTTTTGAAAATATAGGATAAACTGAAGGAAAAGACTTACCCATTCG
GTGACTTTCGCGGTCGCCCTCACTGAACCGACTTGAATCTGAACTACGATTTTTTCCAAGTCTT
ACCGAAATCGGATTTCCTTTTCGTGCCATATTTTTTGACTTTATGGATTTCTGTCCCTTTTTTC
TTCCCGGTACAATATTTGTTCTCGAAAGTCTGAGTTTCCGTGTACTCTCCAAATTTATGACCAA
C
Conservation Information
Conserved circRNAs NA
PMCS 0.359703587
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017