Detail information of Mt_circ_igg.12


General Information
CircRNA Name Mt_circ_igg.12
ID in PlantcircBase ath_circ_046543
Alias Ath_circ_FC4034, Ath_circ_FC5831
Organism Arabidpsis thaliana
Position chrMt: 358403-362051  JBrowse»
Reference genome TAIR10.38
Type   ig-circRNA
Identification method circRNA_finder
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Mt_circ_igg.1 ATMG00020_circ_g.1 ATMG00020_circ_g.2 ATMG00020_circ_g.3 ATMG00020_circ_g.4 ATMG00020_circ_g.5 ATMG00020_circ_g.6 ATMG00020_circ_g.7 ATMG00020_circ_g.8 ATMG00020_circ_g.9 ATMG00020_circ_g.10 ATMG00020_circ_g.11 ATMG00020_circ_g.12 ATMG00020_circ_g.13 Mt_circ_igg.14 ATMG00020_circ_g.15 Mt_circ_ag.1 ATMG00020_circ_g.2 Mt_circ_ag.3 ATMG00020_circ_g.4 Mt_circ_igg.5 Mt_circ_igg.6 Mt_circ_igg.7 Mt_circ_ig.1 Mt_circ_igg.2 Mt_circ_igg.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_igg.6 Mt_circ_ig.7 Mt_circ_igg.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 Mt_circ_igg.12 Mt_circ_ig.13 Mt_circ_ig.14 Mt_circ_igg.15 Mt_circ_igg.16 ATMG00030_circ_g.1 ATMG00030_circ_g.2 ATMG00030_circ_g.3 Mt_circ_ig.4 ATMG00060_circ_g.1 ATMG00060_circ_g.2 ATMG00060_circ_g.3 Mt_circ_ag.4 Mt_circ_ag.5 Mt_circ_ig.6 Mt_circ_ig.7 Mt_circ_ig.8 Mt_circ_ig.9 Mt_circ_ig.10 ATMG00070_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 ATMG00090_circ_g.1 ATMG00090_circ_g.2 ATMG00090_circ_g.3 ATMG00090_circ_g.4 ATMG00090_circ_g.5 ATMG00090_circ_g.6 Mt_circ_igg.7 ATMG00090_circ_g.8 ATMG00090_circ_g.9 ATMG00090_circ_g.10 ATMG00090_circ_g.11 Mt_circ_igg.12 Mt_circ_igg.13 Mt_circ_ag.14 ATMG00110_circ_g.1 ATMG00110_circ_g.2 Mt_circ_ig.3 Mt_circ_ig.4 Mt_circ_igg.5 ATMG00160_circ_g.1 ATMG00160_circ_g.2 ATMG00160_circ_g.3 ATMG00160_circ_g.4 Mt_circ_igg.5 Mt_circ_ig.6 ATMG00180_circ_g.1 ATMG00180_circ_g.2 ATMG00180_circ_g.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_ig.6 Mt_circ_ig.7 Mt_circ_ig.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_igg.11 Mt_circ_igg.12 Mt_circ_igg.13 Mt_circ_igg.14 Mt_circ_igg.15 ATMG00480_circ_g.1 ATMG00510_circ_g.1 ATMG00510_circ_g.2 ATMG00510_circ_g.3 ATMG00510_circ_g.4 ATMG00510_circ_g.5 ATMG00510_circ_g.6 ATMG00510_circ_g.7 ATMG00510_circ_g.8 ATMG00510_circ_g.9 ATMG00510_circ_g.10 Mt_circ_ag.11 ATMG00513_circ_g.1 ATMG00513_circ_g.2 ATMG00580_circ_g.1 ATMG00580_circ_g.2 ATMG00580_circ_g.3 ATMG00580_circ_g.4 ATMG00580_circ_g.5 ATMG00580_circ_g.6 ATMG00580_circ_g.7 ATMG00580_circ_g.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 ATMG00640_circ_g.1 Mt_circ_ig.2 Mt_circ_igg.3 Mt_circ_igg.4 Mt_circ_igg.5 Mt_circ_igg.6 Mt_circ_ig.7 Mt_circ_ig.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 Mt_circ_ig.12 Mt_circ_ig.13 Mt_circ_ig.14 Mt_circ_ig.15 Mt_circ_ig.16 Mt_circ_ig.17 Mt_circ_ig.18 Mt_circ_ig.19 Mt_circ_ig.20 Mt_circ_ig.21 Mt_circ_ig.22 Mt_circ_ig.23 Mt_circ_ig.24 Mt_circ_ig.25 Mt_circ_ig.26 Mt_circ_ig.27 Mt_circ_ig.28 ATMG00660_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 ATMG00670_circ_g.1 Mt_circ_ig.2 Mt_circ_igg.3 Mt_circ_igg.4 Mt_circ_igg.5 Mt_circ_ig.6 ATMG00780_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_igg.6 Mt_circ_igg.7 ATMG01060_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_ig.6 Mt_circ_ig.7 Mt_circ_igg.8 Mt_circ_igg.9 Mt_circ_igg.10 Mt_circ_igg.11 Mt_circ_igg.12 Mt_circ_ig.13 Mt_circ_ig.14 Mt_circ_ig.15 Mt_circ_ig.16 Mt_circ_ig.17 Mt_circ_ig.18 Mt_circ_ig.19 Mt_circ_ig.20 Mt_circ_ig.21 Mt_circ_ig.22 Mt_circ_igg.23 Mt_circ_igg.24 Mt_circ_ig.25 ATMG01320_circ_g.1 ATMG01320_circ_g.2 ATMG01320_circ_g.3 Mt_circ_ig.4 Mt_circ_igg.5 Mt_circ_ig.6 Mt_circ_igg.7 Mt_circ_igg.8 ATMG01360_circ_g.1 ATMG01360_circ_g.2 ATMG01360_circ_g.3 ATMG01360_circ_g.4 ATMG01360_circ_g.5 ATMG01360_circ_g.6 ATMG01360_circ_g.7 Mt_circ_igg.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 Mt_circ_igg.13 Mt_circ_ig.14 ATMG01380_circ_g.1 Mt_circ_igg.2 Mt_circ_igg.3 ATMG01380_circ_g.4 Mt_circ_igg.5 Mt_circ_igg.6 ATMG01390_circ_g.1 ATMG01390_circ_g.2 ATMG01390_circ_g.3 ATMG01390_circ_g.4 ATMG01390_circ_g.5 ATMG01390_circ_g.6 ATMG01390_circ_g.7 ATMG01390_circ_g.8 ATMG01390_circ_g.9 ATMG01390_circ_g.10 ATMG01390_circ_g.11 ATMG01390_circ_g.12 ATMG01390_circ_g.13 ATMG01390_circ_g.14 ATMG01390_circ_g.15 ATMG01390_circ_g.16 ATMG01390_circ_g.17
Support reads 2
Tissues whole_plant
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAGCGAGAAAAGCCCTTTCGCACTTCTTAGTAAAGCGCGGCGCTAGCTGCAATCAAACTCAAG
CGCAGACTAGAAAGGGCTTGGAAAGGCGCCGTCTCCctagtaattgagtgacagcattcctgga
ccaattctataaacagccaatcaggcatatcatggtacaggtgaaagaaacttatccaatacag
atcttatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTAGTAATTGAGTGACAGCATTCCTGGACCAATTCTATAAACAGCCAATCAGGCATATCATGGT
ACAGGTGAAAGAAACTTATCCAATACAGATCTTATCACCTGCCCATCAACGCTCAACCGTCTGC
TCCTCTCGTGCGTGTAGGAATAATCAAAAGAGGAGACAGCATGCCTATTATTAAGAACCCAATT
CTACTAAAAACGATAACAACGATTCGAGGTTCTCAATCAAGGCAGAAAGCAAGAAACCCATCCA
GCTAGGAGGAAAGCAAATCAAGGAGACCAATCAGACATCTAGATTCTATAGTACGCGTATGTGT
ACGTACCCAGGCTAAAACAGCAAATCAAACTTGGCTATCGTTTGAGAGCAACCTATCGCTAAAC
ACAAACCAATCCTTTTACACAGTCCATTGAAAGGAAGAAAACAAGGGTGGAAATTCATGTTCCT
TTTTACACAGACCTCCAAAACTCGAATAGGCCAATCTTACTTTTCCTCATTCTAGAGGTTGCAA
GGGAAGAAAACAAGATTGGTTCTTTATGAAACCTGGTTCAAAGCAACGAACTCCGCTCTCTCCC
GTGGGCACATTCCTATTATAGTAAACGGGGACTTCTCTCTTTATTCCTATGCGTGCTTTACTTG
ACTCCTCTGAATTCAGAACAATGACTTTTAGGCTATTTTTCCCCACCGGCAAGAATGAACTTCT
ATGTGTTAAGCAAAGAAGAACAGAAGATCTATTCCAGTAGTTAGGTACAATCTTGGACGGCCGG
GGACCTACTTCGCGGGACCGCCTAAAAGGACTTGGTCCACACGCGGCGAAGTTTCTTTGGGCGG
CGTTTTATCGATTGATATCTAAAGTGACTGGAATTCGAATCTTCTTATATAAGGAATTATCGAT
TATAAACTTCTTATATAAGGAATTATCGATTATAAACGAGGATGAAAGAAGTTAGGAATAAAAA
CCCGATGTTGTGTTCTCATGCCCGGTCGAAGTCCAAGGCCAACCCGGTCTGTTGCCAATGAGTT
GTGAGGAAGTCCACCGTCAAGTGCGGGATGTGAGGCCACGTCAACTGTGTATGTTGCTGCGAAG
GTCAACCAAGTCGAGGAATGCGCTGCGGAAAAAATAAAAGTCACTGAGGATTTGCCTTCGCGGA
TACCAATTGCTTGGATGGATGCGTTTGAAAGCCTCGAGATGACTTGCAGAAAAAATGCTTTCTA
GGTTTGTCTTGTGTCTCCGTAACAAATGGTCCATTTATTGATTAATGGGCGAACGACGGGAATT
GAACCCGCGCATGGTGGATTCACAATCCACTGCCTTGATCCACTTGGCTACATCCGCCCCTACC
CTCCCCGCCCTTAATTTTGTTTCACTGTCATAAAACCTATTAAACAACTCATTTACATTTGTAT
CTTAGCACCAAACTAAAATGAAATTATTCTCTGCCTAATCATTAATAATCATTAATGAAGGGGC
CCGCCTCACCACTCCACTTCCCCTTTTTATGGAAGCAACCAAACTCACCATGACAAGGGCCAGC
GCTCTTACAGCGAAAGGCTCCTTTTCTCTAGCCAAAAACATTATGCCATCAAGCCAAGCCAGCT
CCCGAATGTCTTTAATCGAGAGAGGTACAGAATAGTCGAAGAAAGTAAGCAACTGCGACAAGAA
AGGACTTATAAGATAACATGGAAAATGAGATTTCACTTCTAGTTATCCGCCAAGGAAATGCCGG
AGGAATTCTATATATAGCTGAGCGATGACCGTTTCGTTGTGCATCTTGGATACAGTACCGAAGG
TCTGCTCTACTAAAACTTTGTCATAATGAGAGCGGGGATCATGAAGATTGAAACTATTCATGTT
GTTTTCTATAAACTCCAAGGCTTCTGGTCTTATGGCCCAGGGTGATTGAGATCAAATTTTGATT
AGGCGCGCATCCGGTTCGTTTACCAATAAAGTAAAAAGTTTATTTTGTAAATGTGCTTTCCGCT
CCATTATTATAATGTCGAATAGCTCGTTGTTTAGGGCACTTTGATAGTGATGAATGTTGACTGC
GTGGTCCAAATAATCTCTGAAAAAGGTTTCGTATTTACCGAAGTGGAGGCAATCCATGAACTAA
TTTTTGAGGTTTCGTATGCGCGAAAAGAGTTTCGCTCTCAACTTCGACGTTCTCTGCCCTATAT
TGTCCAGCCAGGGATGTAAATCAAGTTGGCTGGTTAAAAACATTGGTCCAGCTTAAGCTTGACG
TTGAATGGGAATTTAGAGTTCCAATCCAGCTAGAAGAAGCGTTGTTAGAAGCGGCAAAAGCTAT
GAGATTCGAATCATAGGCAAGGAGTTGTGTCAAGAAAAAACAAAAGACAATCGAAATGGACAAT
CGACGGATGGCAAAAAGATCCAATAACTGAGAAAGACAAAACAAAGATTCTTTTCGATAAAATA
CAAATAAGACAAGATATATGAGCAAGAAATCTGCCAAAGGTCTTCGAGATTTTGTATTTATATG
TCGCTCTATTAACAGAGCCGTGTATACCGGAAAAAAAAATAAAAGCGTTATCGGGTTTGAACAA
CTGAGTTGTTATAATGTTCTTTTTCATTTTAATAAAGTGACTCCGTCGCGATGTTTTTTTTCCT
CTTCTTATGAAATATGAAATTTTCATTTTATTTCTTCACCGGGCTTGGACCATGTCTCCCGAAC
AATCTCAGTACATATGGCGCAAGACGATTCCACATATCGAGGTCGGAATGGGATCGGGTGTTTT
CACGTCTCACCGTAGTGCCCGGTTTGTCTTGATTTCCGATTGATGAACAAGAAGGAAAATGGAA
CTATTGGATTTAGTTGTGACTCGCCCCCGGCTACCTGTCCAAAGGACCAAAAGCCCGCCCGCCG
CCAGTGGGTGGGAAGGAAGCTAGCCCCCTATCTTGGTTGGGGGAAGAGGAACGAAGTCCATCGC
GAAGGATTCAATCCAGCCACAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGAA
GACCCCACCGTGGTATGCGCCAATAAGACCACCAAAAGCCTTTGTGGCACTAGTGGTACACAGA
AGTCATGGGTGATCATTGGTCCGATGCTTCGGGCGAAACCAATTCCCAGGGTGTGACGGGCGGT
GTGTACAGGGCCCGGGTACATATTCACCGCGGCATGCTGATCCGCGATTACTAGCGATTCCAAC
TTCATGTTCCCGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGGATTCGCTCCGCCT
TACAGCCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCA
TGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCACTGGCAGTCCCTCGTGAGTGCGGC
ACGCACCTTTTTGTTTGTTTCGGAGCCGTTTTGGCAGGGCGTACTAAACCCACTTACTTCGTCC
CACACCACCGGGCGGCTCGCCTGAATGCCGAGTCTTTCTCCGCCGCCAACTCGACGTCGTCGTC
ACCTGGGTCAAAAACTTGACTTTACTAAACAAGCGAGAAAAGCCCTTTCGCACTTCTTAGTAAA
GCGCGGCGCTAGCTGCAATCAAACTCAAGCGCAGACTAGAAAGGGCTTGGAAAGGCGCCGTCTC
C
Conservation Information
Conserved circRNAs NA
PMCS 0.218008842
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a