Plant Circular RNA Database

Detail information of ATMG01320_circ_g.2

			
						 General Information
					
						CircRNA Name
						ATMG01320_circ_g.2
					
						ID in PlantcircBase
						ath_circ_046525
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chrMt: 330313-332944  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							i-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							ATMG01320						
					
						Parent gene annotation
						
							NADH dehydrogenase 2B
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Mt_circ_igg.1 ATMG00020_circ_g.1 ATMG00020_circ_g.2 ATMG00020_circ_g.3 ATMG00020_circ_g.4 ATMG00020_circ_g.5 ATMG00020_circ_g.6 ATMG00020_circ_g.7 ATMG00020_circ_g.8 ATMG00020_circ_g.9 ATMG00020_circ_g.10 ATMG00020_circ_g.11 ATMG00020_circ_g.12 ATMG00020_circ_g.13 Mt_circ_igg.14 ATMG00020_circ_g.15 Mt_circ_ag.1 ATMG00020_circ_g.2 Mt_circ_ag.3 ATMG00020_circ_g.4 Mt_circ_igg.5 Mt_circ_igg.6 Mt_circ_igg.7 Mt_circ_ig.1 Mt_circ_igg.2 Mt_circ_igg.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_igg.6 Mt_circ_ig.7 Mt_circ_igg.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 Mt_circ_igg.12 Mt_circ_ig.13 Mt_circ_ig.14 Mt_circ_igg.15 Mt_circ_igg.16 ATMG00030_circ_g.1 ATMG00030_circ_g.2 ATMG00030_circ_g.3 Mt_circ_ig.4 ATMG00060_circ_g.1 ATMG00060_circ_g.2 ATMG00060_circ_g.3 Mt_circ_ag.4 Mt_circ_ag.5 Mt_circ_ig.6 Mt_circ_ig.7 Mt_circ_ig.8 Mt_circ_ig.9 Mt_circ_ig.10 ATMG00070_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 ATMG00090_circ_g.1 ATMG00090_circ_g.2 ATMG00090_circ_g.3 ATMG00090_circ_g.4 ATMG00090_circ_g.5 ATMG00090_circ_g.6 Mt_circ_igg.7 ATMG00090_circ_g.8 ATMG00090_circ_g.9 ATMG00090_circ_g.10 ATMG00090_circ_g.11 Mt_circ_igg.12 Mt_circ_igg.13 Mt_circ_ag.14 ATMG00110_circ_g.1 ATMG00110_circ_g.2 Mt_circ_ig.3 Mt_circ_ig.4 Mt_circ_igg.5 ATMG00160_circ_g.1 ATMG00160_circ_g.2 ATMG00160_circ_g.3 ATMG00160_circ_g.4 Mt_circ_igg.5 Mt_circ_ig.6 ATMG00180_circ_g.1 ATMG00180_circ_g.2 ATMG00180_circ_g.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_ig.6 Mt_circ_ig.7 Mt_circ_ig.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_igg.11 Mt_circ_igg.12 Mt_circ_igg.13 Mt_circ_igg.14 Mt_circ_igg.15 ATMG00480_circ_g.1 ATMG00510_circ_g.1 ATMG00510_circ_g.2 ATMG00510_circ_g.3 ATMG00510_circ_g.4 ATMG00510_circ_g.5 ATMG00510_circ_g.6 ATMG00510_circ_g.7 ATMG00510_circ_g.8 ATMG00510_circ_g.9 ATMG00510_circ_g.10 Mt_circ_ag.11 ATMG00513_circ_g.1 ATMG00513_circ_g.2 ATMG00580_circ_g.1 ATMG00580_circ_g.2 ATMG00580_circ_g.3 ATMG00580_circ_g.4 ATMG00580_circ_g.5 ATMG00580_circ_g.6 ATMG00580_circ_g.7 ATMG00580_circ_g.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 ATMG00640_circ_g.1 Mt_circ_ig.2 Mt_circ_igg.3 Mt_circ_igg.4 Mt_circ_igg.5 Mt_circ_igg.6 Mt_circ_ig.7 Mt_circ_ig.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 Mt_circ_ig.12 Mt_circ_ig.13 Mt_circ_ig.14 Mt_circ_ig.15 Mt_circ_ig.16 Mt_circ_ig.17 Mt_circ_ig.18 Mt_circ_ig.19 Mt_circ_ig.20 Mt_circ_ig.21 Mt_circ_ig.22 Mt_circ_ig.23 Mt_circ_ig.24 Mt_circ_ig.25 Mt_circ_ig.26 Mt_circ_ig.27 Mt_circ_ig.28 ATMG00660_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 ATMG00670_circ_g.1 Mt_circ_ig.2 Mt_circ_igg.3 Mt_circ_igg.4 Mt_circ_igg.5 Mt_circ_ig.6 ATMG00780_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_igg.6 Mt_circ_igg.7 ATMG01060_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_ig.6 Mt_circ_ig.7 Mt_circ_igg.8 Mt_circ_igg.9 Mt_circ_igg.10 Mt_circ_igg.11 Mt_circ_igg.12 Mt_circ_ig.13 Mt_circ_ig.14 Mt_circ_ig.15 Mt_circ_ig.16 Mt_circ_ig.17 Mt_circ_ig.18 Mt_circ_ig.19 Mt_circ_ig.20 Mt_circ_ig.21 Mt_circ_ig.22 Mt_circ_igg.23 Mt_circ_igg.24 Mt_circ_ig.25 ATMG01320_circ_g.1 ATMG01320_circ_g.3 Mt_circ_ig.4 Mt_circ_igg.5 Mt_circ_ig.6 Mt_circ_igg.7 Mt_circ_igg.8 ATMG01360_circ_g.1 ATMG01360_circ_g.2 ATMG01360_circ_g.3 ATMG01360_circ_g.4 ATMG01360_circ_g.5 ATMG01360_circ_g.6 ATMG01360_circ_g.7 Mt_circ_igg.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 Mt_circ_igg.12 Mt_circ_igg.13 Mt_circ_ig.14 ATMG01380_circ_g.1 Mt_circ_igg.2 Mt_circ_igg.3 ATMG01380_circ_g.4 Mt_circ_igg.5 Mt_circ_igg.6 ATMG01390_circ_g.1 ATMG01390_circ_g.2 ATMG01390_circ_g.3 ATMG01390_circ_g.4 ATMG01390_circ_g.5 ATMG01390_circ_g.6 ATMG01390_circ_g.7 ATMG01390_circ_g.8 ATMG01390_circ_g.9 ATMG01390_circ_g.10 ATMG01390_circ_g.11 ATMG01390_circ_g.12 ATMG01390_circ_g.13 ATMG01390_circ_g.14 ATMG01390_circ_g.15 ATMG01390_circ_g.16 ATMG01390_circ_g.17 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GA-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						0

General Information
CircRNA Name	ATMG01320_circ_g.2
ID in PlantcircBase	ath_circ_046525
Alias	NA
Organism	Arabidpsis thaliana
Position	chrMt: 330313-332944 JBrowse»
Reference genome	TAIR10.38
Type	i-circRNA
Identification method	CIRCexplorer
Parent gene	ATMG01320
Parent gene annotation	NADH dehydrogenase 2B
Parent gene strand	-
Alternative splicing	Mt_circ_igg.1 ATMG00020_circ_g.1 ATMG00020_circ_g.2 ATMG00020_circ_g.3 ATMG00020_circ_g.4 ATMG00020_circ_g.5 ATMG00020_circ_g.6 ATMG00020_circ_g.7 ATMG00020_circ_g.8 ATMG00020_circ_g.9 ATMG00020_circ_g.10 ATMG00020_circ_g.11 ATMG00020_circ_g.12 ATMG00020_circ_g.13 Mt_circ_igg.14 ATMG00020_circ_g.15 Mt_circ_ag.1 ATMG00020_circ_g.2 Mt_circ_ag.3 ATMG00020_circ_g.4 Mt_circ_igg.5 Mt_circ_igg.6 Mt_circ_igg.7 Mt_circ_ig.1 Mt_circ_igg.2 Mt_circ_igg.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_igg.6 Mt_circ_ig.7 Mt_circ_igg.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 Mt_circ_igg.12 Mt_circ_ig.13 Mt_circ_ig.14 Mt_circ_igg.15 Mt_circ_igg.16 ATMG00030_circ_g.1 ATMG00030_circ_g.2 ATMG00030_circ_g.3 Mt_circ_ig.4 ATMG00060_circ_g.1 ATMG00060_circ_g.2 ATMG00060_circ_g.3 Mt_circ_ag.4 Mt_circ_ag.5 Mt_circ_ig.6 Mt_circ_ig.7 Mt_circ_ig.8 Mt_circ_ig.9 Mt_circ_ig.10 ATMG00070_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 ATMG00090_circ_g.1 ATMG00090_circ_g.2 ATMG00090_circ_g.3 ATMG00090_circ_g.4 ATMG00090_circ_g.5 ATMG00090_circ_g.6 Mt_circ_igg.7 ATMG00090_circ_g.8 ATMG00090_circ_g.9 ATMG00090_circ_g.10 ATMG00090_circ_g.11 Mt_circ_igg.12 Mt_circ_igg.13 Mt_circ_ag.14 ATMG00110_circ_g.1 ATMG00110_circ_g.2 Mt_circ_ig.3 Mt_circ_ig.4 Mt_circ_igg.5 ATMG00160_circ_g.1 ATMG00160_circ_g.2 ATMG00160_circ_g.3 ATMG00160_circ_g.4 Mt_circ_igg.5 Mt_circ_ig.6 ATMG00180_circ_g.1 ATMG00180_circ_g.2 ATMG00180_circ_g.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_ig.6 Mt_circ_ig.7 Mt_circ_ig.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_igg.11 Mt_circ_igg.12 Mt_circ_igg.13 Mt_circ_igg.14 Mt_circ_igg.15 ATMG00480_circ_g.1 ATMG00510_circ_g.1 ATMG00510_circ_g.2 ATMG00510_circ_g.3 ATMG00510_circ_g.4 ATMG00510_circ_g.5 ATMG00510_circ_g.6 ATMG00510_circ_g.7 ATMG00510_circ_g.8 ATMG00510_circ_g.9 ATMG00510_circ_g.10 Mt_circ_ag.11 ATMG00513_circ_g.1 ATMG00513_circ_g.2 ATMG00580_circ_g.1 ATMG00580_circ_g.2 ATMG00580_circ_g.3 ATMG00580_circ_g.4 ATMG00580_circ_g.5 ATMG00580_circ_g.6 ATMG00580_circ_g.7 ATMG00580_circ_g.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 ATMG00640_circ_g.1 Mt_circ_ig.2 Mt_circ_igg.3 Mt_circ_igg.4 Mt_circ_igg.5 Mt_circ_igg.6 Mt_circ_ig.7 Mt_circ_ig.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 Mt_circ_ig.12 Mt_circ_ig.13 Mt_circ_ig.14 Mt_circ_ig.15 Mt_circ_ig.16 Mt_circ_ig.17 Mt_circ_ig.18 Mt_circ_ig.19 Mt_circ_ig.20 Mt_circ_ig.21 Mt_circ_ig.22 Mt_circ_ig.23 Mt_circ_ig.24 Mt_circ_ig.25 Mt_circ_ig.26 Mt_circ_ig.27 Mt_circ_ig.28 ATMG00660_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 ATMG00670_circ_g.1 Mt_circ_ig.2 Mt_circ_igg.3 Mt_circ_igg.4 Mt_circ_igg.5 Mt_circ_ig.6 ATMG00780_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_igg.6 Mt_circ_igg.7 ATMG01060_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_ig.6 Mt_circ_ig.7 Mt_circ_igg.8 Mt_circ_igg.9 Mt_circ_igg.10 Mt_circ_igg.11 Mt_circ_igg.12 Mt_circ_ig.13 Mt_circ_ig.14 Mt_circ_ig.15 Mt_circ_ig.16 Mt_circ_ig.17 Mt_circ_ig.18 Mt_circ_ig.19 Mt_circ_ig.20 Mt_circ_ig.21 Mt_circ_ig.22 Mt_circ_igg.23 Mt_circ_igg.24 Mt_circ_ig.25 ATMG01320_circ_g.1 ATMG01320_circ_g.3 Mt_circ_ig.4 Mt_circ_igg.5 Mt_circ_ig.6 Mt_circ_igg.7 Mt_circ_igg.8 ATMG01360_circ_g.1 ATMG01360_circ_g.2 ATMG01360_circ_g.3 ATMG01360_circ_g.4 ATMG01360_circ_g.5 ATMG01360_circ_g.6 ATMG01360_circ_g.7 Mt_circ_igg.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 Mt_circ_igg.12 Mt_circ_igg.13 Mt_circ_ig.14 ATMG01380_circ_g.1 Mt_circ_igg.2 Mt_circ_igg.3 ATMG01380_circ_g.4 Mt_circ_igg.5 Mt_circ_igg.6 ATMG01390_circ_g.1 ATMG01390_circ_g.2 ATMG01390_circ_g.3 ATMG01390_circ_g.4 ATMG01390_circ_g.5 ATMG01390_circ_g.6 ATMG01390_circ_g.7 ATMG01390_circ_g.8 ATMG01390_circ_g.9 ATMG01390_circ_g.10 ATMG01390_circ_g.11 ATMG01390_circ_g.12 ATMG01390_circ_g.13 ATMG01390_circ_g.14 ATMG01390_circ_g.15 ATMG01390_circ_g.16 ATMG01390_circ_g.17
Support reads	2
Tissues	root
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GA-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	0

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGCCCGGCCCGCGCGCGGTTAGGAAGATTGGCCGCAATCTGAGCGGTACCACCCACCCTACCCT
ACCACCTATAGGCGGCCGTCCGTCCTACAGCCGCCCtcaaagggaatatggagtccgaggggga
gggggttttcttcggggctcgagagattgaatagacccacaagtttgaaattcgccactgggga
attcacac

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 2632
Transcript exons: 330313-332944
TCAAAGGGAATATGGAGTCCGAGGGGGAGGGGGTTTTCTTCGGGGCTCGAGAGATTGAATAGAC
CCACAAGTTTGAAATTCGCCACTGGGGAATTCACACGAAAGGGAACGAGGAATTCTCAACGAAA
AAAGTGCTCTCTGAACCGAACGTGAAAGTTTTTTTCCATCAGACGGCTGTTCCTGTAACTCCAC
TCTCGACTTGGATTATATATCCAAAAAGGTCCGCTCTCGGCCATTCCACACGCTGCCTAGCCGA
GGTGTGGTTTCTGAAGTGGATTCTCTCTTTTCTAGTAGATGCCGAACCTGCTGCCCCATTGACT
AAGAAGAGGGGCGGGCGCAGCAGCTACATGGACCCCTTCCTTTCTGTTGTTGCCAGCGCTTTCC
CGGGCCGAGCCGGAATTTTTGATTATTATTCTAATGGGCAGGCAAAGCCGCAGGCTGCTATCCC
AATAGGCCAGCGGGCGGTTCGAGGAGAGGCTCCGGCAATCATAGCACCGCGGTCGAAAAAGCGT
GCTCCCTTCAGATAACACGCACCGTAGCTATCCTCGGCCTTCTTCGTTTTCGATGCAAAAGAAA
GGAAATCTCTCGATCTCCGAAAGCCTTTTCCTTACCCCGCCGCATCTCCCTCCCTTCGTCGAGC
CTTTCCGGGGTTGTTCCTTCCTTATCAGAACTTGGCGGGCATTCTTTCCAGCCGGGGGATGGGT
TTTGTTTGAACATAGGCTCAAACATAATTTTAAGGTCCTAGCTACGCCATGCGTTCAATACCAA
ATCTGGAAAGCTGCAGAAATGACAAAAAGAGGGCCGCTTTCCTATGTTGCACTGAAAAAAGAAG
GACCTAAGAGCGTCTTCTCTTAGGTTTTTTCCTCCCGCGCCCGCCGCCGCCTGGCCCCCGTTAG
AGGGAAGGGGAAGATTAGCAAAGCGAAAAAAGACAGAGGAAGGGGGAGCAGCATCTTATTCTCT
TCGCGAGAACTTCCGGATTGAAGAAGCATTCGGAACGGGCTCCAGCGTTCATTTCATTGGCGGG
AAACGATCCAATCCATTCGGGGCTTCGGCCAAAAACGAATTCGACTTGATTCATAGATAGAATC
AATGATAAATAAACAAAAGATAGATGTTCGAGATATCTTTTCTTTCTATAAAAAAAGAGGAATA
GAATAGACATCCCTTTCTTTAGATGTCTATCTATCCTTCCGATTTTATATCGTTATATCTGCTC
TCTCAATTTTTTTTTAGAGAGAGCAGATAGATCCTATCCCCTATATCGAACACTAATTCCTATC
TATTGATAGGAAGATCTTCGTCTAATAGCGGACTTTGCCTTTTTTTAGGAATTTCTCATATCCA
AGGCAGCTTACCACAAGAACCCCACCCCATACAACTAGTTGGGGGGGCTGTTCGCCTTTTGAAT
CAAACAAAGATTGAAGTAGGTAGGGGCTTCATAGCTACTTTCATTCTAAAGGAAAGCGAAGAAC
CAATCTTTAGTCAATAGGAGCCCTACTTCCCTCGACCTCATCACTTCAATTGTTGCGCAAACCT
CTTTCTTAGTCACCGGGGGAGCGCACCTTTGTCACAGTATTTCGAGCTGTTTGATAGTGACTTC
TTGCGTTTGGTAGGGCGACGAAAGGGCTACTTCCTTCAATCTAGGAAACAGCCGGAAACTCGAG
AAGGTCGCCTTTGGAACGGTTCGCCAGTAACCAAAGCCTCACTCCTTCCTTTTGATTATGTCGT
GACGCTGACTGAATCCAATCTATAAAAAAACCCGGAAACTCAACAAAGTGCGTTCCCTTCGTCA
AGTAGGTAAAGTAGGCATACGAACCACTTTTGCTTTGCGGAATAAAACAATGAATGAGGCGGAA
TGGAGAAAGGAAAGGTCTGCAGGTATTTATTACTCTTATAAAAGAGGAACTCGAGCTTATTGCG
AGAGGTGCTTTACGAACTCGACTAAAAGGAGAGGGGCGAAGTCACTCGAGCACTTGTCTAGAGA
GGTTGTGAACACAAACTCGACTGAAAGGAGAGGGACAAGGGCGGTCTTGCTTGGCGCGAAGGCT
GCTGGTTTGGGGGTACGGTACTAAAGGTCCTCGGACTTCCAGGCGGTTTTTATTTTGGGCAGCT
GTTCACCGTTGGATCTCGCCAATACAGCCCCCTATGGTTTTTGTTACCGAGATATCTTTTTTTT
TCATTGTTCCCAGGGATTTTTTGGGTAATCTGCTCCCATGCTGCAAACAGTCAAATCTGAACTC
AACCTTGTCGCTCTTCTTTCTTTCCTCGCGGGCTGGAAGCACACCAGCAGCGTGCGTTGCGTGA
TTCTACTGTGTTTTTTGCACTTGACTGGGTGGACAGTTGACCGGAAGAGAACTTCGATTCGCCC
GGCCAGCAGGCGGGCGACGTGCTTATCTTGTGTGACAACACTACAGAGCGAGTGACTCTTCTAG
GCGGGCAGCTGTGTGACAACACTACAAGGGTTTTTTTCCTCGTGTAACATGCTATGGTCTCAAT
GCCCTTACGAGGTAGTGATGAGTTTCACTCGCTCTAAGCCCGGCCCGCGCGCGGTTAGGAAGAT
TGGCCGCAATCTGAGCGGTACCACCCACCCTACCCTACCACCTATAGGCGGCCGTCCGTCCTAC
AGCCGCCC
						
					

						Genomic sequence
						
							TCAAAGGGAATATGGAGTCCGAGGGGGAGGGGGTTTTCTTCGGGGCTCGAGAGATTGAATAGAC
CCACAAGTTTGAAATTCGCCACTGGGGAATTCACACGAAAGGGAACGAGGAATTCTCAACGAAA
AAAGTGCTCTCTGAACCGAACGTGAAAGTTTTTTTCCATCAGACGGCTGTTCCTGTAACTCCAC
TCTCGACTTGGATTATATATCCAAAAAGGTCCGCTCTCGGCCATTCCACACGCTGCCTAGCCGA
GGTGTGGTTTCTGAAGTGGATTCTCTCTTTTCTAGTAGATGCCGAACCTGCTGCCCCATTGACT
AAGAAGAGGGGCGGGCGCAGCAGCTACATGGACCCCTTCCTTTCTGTTGTTGCCAGCGCTTTCC
CGGGCCGAGCCGGAATTTTTGATTATTATTCTAATGGGCAGGCAAAGCCGCAGGCTGCTATCCC
AATAGGCCAGCGGGCGGTTCGAGGAGAGGCTCCGGCAATCATAGCACCGCGGTCGAAAAAGCGT
GCTCCCTTCAGATAACACGCACCGTAGCTATCCTCGGCCTTCTTCGTTTTCGATGCAAAAGAAA
GGAAATCTCTCGATCTCCGAAAGCCTTTTCCTTACCCCGCCGCATCTCCCTCCCTTCGTCGAGC
CTTTCCGGGGTTGTTCCTTCCTTATCAGAACTTGGCGGGCATTCTTTCCAGCCGGGGGATGGGT
TTTGTTTGAACATAGGCTCAAACATAATTTTAAGGTCCTAGCTACGCCATGCGTTCAATACCAA
ATCTGGAAAGCTGCAGAAATGACAAAAAGAGGGCCGCTTTCCTATGTTGCACTGAAAAAAGAAG
GACCTAAGAGCGTCTTCTCTTAGGTTTTTTCCTCCCGCGCCCGCCGCCGCCTGGCCCCCGTTAG
AGGGAAGGGGAAGATTAGCAAAGCGAAAAAAGACAGAGGAAGGGGGAGCAGCATCTTATTCTCT
TCGCGAGAACTTCCGGATTGAAGAAGCATTCGGAACGGGCTCCAGCGTTCATTTCATTGGCGGG
AAACGATCCAATCCATTCGGGGCTTCGGCCAAAAACGAATTCGACTTGATTCATAGATAGAATC
AATGATAAATAAACAAAAGATAGATGTTCGAGATATCTTTTCTTTCTATAAAAAAAGAGGAATA
GAATAGACATCCCTTTCTTTAGATGTCTATCTATCCTTCCGATTTTATATCGTTATATCTGCTC
TCTCAATTTTTTTTTAGAGAGAGCAGATAGATCCTATCCCCTATATCGAACACTAATTCCTATC
TATTGATAGGAAGATCTTCGTCTAATAGCGGACTTTGCCTTTTTTTAGGAATTTCTCATATCCA
AGGCAGCTTACCACAAGAACCCCACCCCATACAACTAGTTGGGGGGGCTGTTCGCCTTTTGAAT
CAAACAAAGATTGAAGTAGGTAGGGGCTTCATAGCTACTTTCATTCTAAAGGAAAGCGAAGAAC
CAATCTTTAGTCAATAGGAGCCCTACTTCCCTCGACCTCATCACTTCAATTGTTGCGCAAACCT
CTTTCTTAGTCACCGGGGGAGCGCACCTTTGTCACAGTATTTCGAGCTGTTTGATAGTGACTTC
TTGCGTTTGGTAGGGCGACGAAAGGGCTACTTCCTTCAATCTAGGAAACAGCCGGAAACTCGAG
AAGGTCGCCTTTGGAACGGTTCGCCAGTAACCAAAGCCTCACTCCTTCCTTTTGATTATGTCGT
GACGCTGACTGAATCCAATCTATAAAAAAACCCGGAAACTCAACAAAGTGCGTTCCCTTCGTCA
AGTAGGTAAAGTAGGCATACGAACCACTTTTGCTTTGCGGAATAAAACAATGAATGAGGCGGAA
TGGAGAAAGGAAAGGTCTGCAGGTATTTATTACTCTTATAAAAGAGGAACTCGAGCTTATTGCG
AGAGGTGCTTTACGAACTCGACTAAAAGGAGAGGGGCGAAGTCACTCGAGCACTTGTCTAGAGA
GGTTGTGAACACAAACTCGACTGAAAGGAGAGGGACAAGGGCGGTCTTGCTTGGCGCGAAGGCT
GCTGGTTTGGGGGTACGGTACTAAAGGTCCTCGGACTTCCAGGCGGTTTTTATTTTGGGCAGCT
GTTCACCGTTGGATCTCGCCAATACAGCCCCCTATGGTTTTTGTTACCGAGATATCTTTTTTTT
TCATTGTTCCCAGGGATTTTTTGGGTAATCTGCTCCCATGCTGCAAACAGTCAAATCTGAACTC
AACCTTGTCGCTCTTCTTTCTTTCCTCGCGGGCTGGAAGCACACCAGCAGCGTGCGTTGCGTGA
TTCTACTGTGTTTTTTGCACTTGACTGGGTGGACAGTTGACCGGAAGAGAACTTCGATTCGCCC
GGCCAGCAGGCGGGCGACGTGCTTATCTTGTGTGACAACACTACAGAGCGAGTGACTCTTCTAG
GCGGGCAGCTGTGTGACAACACTACAAGGGTTTTTTTCCTCGTGTAACATGCTATGGTCTCAAT
GCCCTTACGAGGTAGTGATGAGTTTCACTCGCTCTAAGCCCGGCCCGCGCGCGGTTAGGAAGAT
TGGCCGCAATCTGAGCGGTACCACCCACCCTACCCTACCACCTATAGGCGGCCGTCCGTCCTAC
AGCCGCCC
						
					

			
		

Sequences
Splice junction sequence	AGCCCGGCCCGCGCGCGGTTAGGAAGATTGGCCGCAATCTGAGCGGTACCACCCACCCTACCCT ACCACCTATAGGCGGCCGTCCGTCCTACAGCCGCCCtcaaagggaatatggagtccgaggggga gggggttttcttcggggctcgagagattgaatagacccacaagtttgaaattcgccactgggga attcacac
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 2632 Transcript exons: 330313-332944 TCAAAGGGAATATGGAGTCCGAGGGGGAGGGGGTTTTCTTCGGGGCTCGAGAGATTGAATAGAC CCACAAGTTTGAAATTCGCCACTGGGGAATTCACACGAAAGGGAACGAGGAATTCTCAACGAAA AAAGTGCTCTCTGAACCGAACGTGAAAGTTTTTTTCCATCAGACGGCTGTTCCTGTAACTCCAC TCTCGACTTGGATTATATATCCAAAAAGGTCCGCTCTCGGCCATTCCACACGCTGCCTAGCCGA GGTGTGGTTTCTGAAGTGGATTCTCTCTTTTCTAGTAGATGCCGAACCTGCTGCCCCATTGACT AAGAAGAGGGGCGGGCGCAGCAGCTACATGGACCCCTTCCTTTCTGTTGTTGCCAGCGCTTTCC CGGGCCGAGCCGGAATTTTTGATTATTATTCTAATGGGCAGGCAAAGCCGCAGGCTGCTATCCC AATAGGCCAGCGGGCGGTTCGAGGAGAGGCTCCGGCAATCATAGCACCGCGGTCGAAAAAGCGT GCTCCCTTCAGATAACACGCACCGTAGCTATCCTCGGCCTTCTTCGTTTTCGATGCAAAAGAAA GGAAATCTCTCGATCTCCGAAAGCCTTTTCCTTACCCCGCCGCATCTCCCTCCCTTCGTCGAGC CTTTCCGGGGTTGTTCCTTCCTTATCAGAACTTGGCGGGCATTCTTTCCAGCCGGGGGATGGGT TTTGTTTGAACATAGGCTCAAACATAATTTTAAGGTCCTAGCTACGCCATGCGTTCAATACCAA ATCTGGAAAGCTGCAGAAATGACAAAAAGAGGGCCGCTTTCCTATGTTGCACTGAAAAAAGAAG GACCTAAGAGCGTCTTCTCTTAGGTTTTTTCCTCCCGCGCCCGCCGCCGCCTGGCCCCCGTTAG AGGGAAGGGGAAGATTAGCAAAGCGAAAAAAGACAGAGGAAGGGGGAGCAGCATCTTATTCTCT TCGCGAGAACTTCCGGATTGAAGAAGCATTCGGAACGGGCTCCAGCGTTCATTTCATTGGCGGG AAACGATCCAATCCATTCGGGGCTTCGGCCAAAAACGAATTCGACTTGATTCATAGATAGAATC AATGATAAATAAACAAAAGATAGATGTTCGAGATATCTTTTCTTTCTATAAAAAAAGAGGAATA GAATAGACATCCCTTTCTTTAGATGTCTATCTATCCTTCCGATTTTATATCGTTATATCTGCTC TCTCAATTTTTTTTTAGAGAGAGCAGATAGATCCTATCCCCTATATCGAACACTAATTCCTATC TATTGATAGGAAGATCTTCGTCTAATAGCGGACTTTGCCTTTTTTTAGGAATTTCTCATATCCA AGGCAGCTTACCACAAGAACCCCACCCCATACAACTAGTTGGGGGGGCTGTTCGCCTTTTGAAT CAAACAAAGATTGAAGTAGGTAGGGGCTTCATAGCTACTTTCATTCTAAAGGAAAGCGAAGAAC CAATCTTTAGTCAATAGGAGCCCTACTTCCCTCGACCTCATCACTTCAATTGTTGCGCAAACCT CTTTCTTAGTCACCGGGGGAGCGCACCTTTGTCACAGTATTTCGAGCTGTTTGATAGTGACTTC TTGCGTTTGGTAGGGCGACGAAAGGGCTACTTCCTTCAATCTAGGAAACAGCCGGAAACTCGAG AAGGTCGCCTTTGGAACGGTTCGCCAGTAACCAAAGCCTCACTCCTTCCTTTTGATTATGTCGT GACGCTGACTGAATCCAATCTATAAAAAAACCCGGAAACTCAACAAAGTGCGTTCCCTTCGTCA AGTAGGTAAAGTAGGCATACGAACCACTTTTGCTTTGCGGAATAAAACAATGAATGAGGCGGAA TGGAGAAAGGAAAGGTCTGCAGGTATTTATTACTCTTATAAAAGAGGAACTCGAGCTTATTGCG AGAGGTGCTTTACGAACTCGACTAAAAGGAGAGGGGCGAAGTCACTCGAGCACTTGTCTAGAGA GGTTGTGAACACAAACTCGACTGAAAGGAGAGGGACAAGGGCGGTCTTGCTTGGCGCGAAGGCT GCTGGTTTGGGGGTACGGTACTAAAGGTCCTCGGACTTCCAGGCGGTTTTTATTTTGGGCAGCT GTTCACCGTTGGATCTCGCCAATACAGCCCCCTATGGTTTTTGTTACCGAGATATCTTTTTTTT TCATTGTTCCCAGGGATTTTTTGGGTAATCTGCTCCCATGCTGCAAACAGTCAAATCTGAACTC AACCTTGTCGCTCTTCTTTCTTTCCTCGCGGGCTGGAAGCACACCAGCAGCGTGCGTTGCGTGA TTCTACTGTGTTTTTTGCACTTGACTGGGTGGACAGTTGACCGGAAGAGAACTTCGATTCGCCC GGCCAGCAGGCGGGCGACGTGCTTATCTTGTGTGACAACACTACAGAGCGAGTGACTCTTCTAG GCGGGCAGCTGTGTGACAACACTACAAGGGTTTTTTTCCTCGTGTAACATGCTATGGTCTCAAT GCCCTTACGAGGTAGTGATGAGTTTCACTCGCTCTAAGCCCGGCCCGCGCGCGGTTAGGAAGAT TGGCCGCAATCTGAGCGGTACCACCCACCCTACCCTACCACCTATAGGCGGCCGTCCGTCCTAC AGCCGCCC
Genomic sequence	TCAAAGGGAATATGGAGTCCGAGGGGGAGGGGGTTTTCTTCGGGGCTCGAGAGATTGAATAGAC CCACAAGTTTGAAATTCGCCACTGGGGAATTCACACGAAAGGGAACGAGGAATTCTCAACGAAA AAAGTGCTCTCTGAACCGAACGTGAAAGTTTTTTTCCATCAGACGGCTGTTCCTGTAACTCCAC TCTCGACTTGGATTATATATCCAAAAAGGTCCGCTCTCGGCCATTCCACACGCTGCCTAGCCGA GGTGTGGTTTCTGAAGTGGATTCTCTCTTTTCTAGTAGATGCCGAACCTGCTGCCCCATTGACT AAGAAGAGGGGCGGGCGCAGCAGCTACATGGACCCCTTCCTTTCTGTTGTTGCCAGCGCTTTCC CGGGCCGAGCCGGAATTTTTGATTATTATTCTAATGGGCAGGCAAAGCCGCAGGCTGCTATCCC AATAGGCCAGCGGGCGGTTCGAGGAGAGGCTCCGGCAATCATAGCACCGCGGTCGAAAAAGCGT GCTCCCTTCAGATAACACGCACCGTAGCTATCCTCGGCCTTCTTCGTTTTCGATGCAAAAGAAA GGAAATCTCTCGATCTCCGAAAGCCTTTTCCTTACCCCGCCGCATCTCCCTCCCTTCGTCGAGC CTTTCCGGGGTTGTTCCTTCCTTATCAGAACTTGGCGGGCATTCTTTCCAGCCGGGGGATGGGT TTTGTTTGAACATAGGCTCAAACATAATTTTAAGGTCCTAGCTACGCCATGCGTTCAATACCAA ATCTGGAAAGCTGCAGAAATGACAAAAAGAGGGCCGCTTTCCTATGTTGCACTGAAAAAAGAAG GACCTAAGAGCGTCTTCTCTTAGGTTTTTTCCTCCCGCGCCCGCCGCCGCCTGGCCCCCGTTAG AGGGAAGGGGAAGATTAGCAAAGCGAAAAAAGACAGAGGAAGGGGGAGCAGCATCTTATTCTCT TCGCGAGAACTTCCGGATTGAAGAAGCATTCGGAACGGGCTCCAGCGTTCATTTCATTGGCGGG AAACGATCCAATCCATTCGGGGCTTCGGCCAAAAACGAATTCGACTTGATTCATAGATAGAATC AATGATAAATAAACAAAAGATAGATGTTCGAGATATCTTTTCTTTCTATAAAAAAAGAGGAATA GAATAGACATCCCTTTCTTTAGATGTCTATCTATCCTTCCGATTTTATATCGTTATATCTGCTC TCTCAATTTTTTTTTAGAGAGAGCAGATAGATCCTATCCCCTATATCGAACACTAATTCCTATC TATTGATAGGAAGATCTTCGTCTAATAGCGGACTTTGCCTTTTTTTAGGAATTTCTCATATCCA AGGCAGCTTACCACAAGAACCCCACCCCATACAACTAGTTGGGGGGGCTGTTCGCCTTTTGAAT CAAACAAAGATTGAAGTAGGTAGGGGCTTCATAGCTACTTTCATTCTAAAGGAAAGCGAAGAAC CAATCTTTAGTCAATAGGAGCCCTACTTCCCTCGACCTCATCACTTCAATTGTTGCGCAAACCT CTTTCTTAGTCACCGGGGGAGCGCACCTTTGTCACAGTATTTCGAGCTGTTTGATAGTGACTTC TTGCGTTTGGTAGGGCGACGAAAGGGCTACTTCCTTCAATCTAGGAAACAGCCGGAAACTCGAG AAGGTCGCCTTTGGAACGGTTCGCCAGTAACCAAAGCCTCACTCCTTCCTTTTGATTATGTCGT GACGCTGACTGAATCCAATCTATAAAAAAACCCGGAAACTCAACAAAGTGCGTTCCCTTCGTCA AGTAGGTAAAGTAGGCATACGAACCACTTTTGCTTTGCGGAATAAAACAATGAATGAGGCGGAA TGGAGAAAGGAAAGGTCTGCAGGTATTTATTACTCTTATAAAAGAGGAACTCGAGCTTATTGCG AGAGGTGCTTTACGAACTCGACTAAAAGGAGAGGGGCGAAGTCACTCGAGCACTTGTCTAGAGA GGTTGTGAACACAAACTCGACTGAAAGGAGAGGGACAAGGGCGGTCTTGCTTGGCGCGAAGGCT GCTGGTTTGGGGGTACGGTACTAAAGGTCCTCGGACTTCCAGGCGGTTTTTATTTTGGGCAGCT GTTCACCGTTGGATCTCGCCAATACAGCCCCCTATGGTTTTTGTTACCGAGATATCTTTTTTTT TCATTGTTCCCAGGGATTTTTTGGGTAATCTGCTCCCATGCTGCAAACAGTCAAATCTGAACTC AACCTTGTCGCTCTTCTTTCTTTCCTCGCGGGCTGGAAGCACACCAGCAGCGTGCGTTGCGTGA TTCTACTGTGTTTTTTGCACTTGACTGGGTGGACAGTTGACCGGAAGAGAACTTCGATTCGCCC GGCCAGCAGGCGGGCGACGTGCTTATCTTGTGTGACAACACTACAGAGCGAGTGACTCTTCTAG GCGGGCAGCTGTGTGACAACACTACAAGGGTTTTTTTCCTCGTGTAACATGCTATGGTCTCAAT GCCCTTACGAGGTAGTGATGAGTTTCACTCGCTCTAAGCCCGGCCCGCGCGCGGTTAGGAAGAT TGGCCGCAATCTGAGCGGTACCACCCACCCTACCCTACCACCTATAGGCGGCCGTCCGTCCTAC AGCCGCCC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.516870452

Conservation Information
Conserved circRNAs	NA
PMCS	0.516870452

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of ATMG01320_circ_g.2

Address

Any questions?

Supported by