Detail information of Mt_circ_igg.23


General Information
CircRNA Name Mt_circ_igg.23
ID in PlantcircBase ath_circ_046521
Alias NA
Organism Arabidpsis thaliana
Position chrMt: 296252-297861  JBrowse»
Reference genome TAIR10.38
Type   igg-circRNA
Identification method circRNA_finder
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Mt_circ_igg.1 ATMG00020_circ_g.1 ATMG00020_circ_g.2 ATMG00020_circ_g.3 ATMG00020_circ_g.4 ATMG00020_circ_g.5 ATMG00020_circ_g.6 ATMG00020_circ_g.7 ATMG00020_circ_g.8 ATMG00020_circ_g.9 ATMG00020_circ_g.10 ATMG00020_circ_g.11 ATMG00020_circ_g.12 ATMG00020_circ_g.13 Mt_circ_igg.14 ATMG00020_circ_g.15 Mt_circ_ag.1 ATMG00020_circ_g.2 Mt_circ_ag.3 ATMG00020_circ_g.4 Mt_circ_igg.5 Mt_circ_igg.6 Mt_circ_igg.7 Mt_circ_ig.1 Mt_circ_igg.2 Mt_circ_igg.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_igg.6 Mt_circ_ig.7 Mt_circ_igg.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 Mt_circ_igg.12 Mt_circ_ig.13 Mt_circ_ig.14 Mt_circ_igg.15 Mt_circ_igg.16 ATMG00030_circ_g.1 ATMG00030_circ_g.2 ATMG00030_circ_g.3 Mt_circ_ig.4 ATMG00060_circ_g.1 ATMG00060_circ_g.2 ATMG00060_circ_g.3 Mt_circ_ag.4 Mt_circ_ag.5 Mt_circ_ig.6 Mt_circ_ig.7 Mt_circ_ig.8 Mt_circ_ig.9 Mt_circ_ig.10 ATMG00070_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 ATMG00090_circ_g.1 ATMG00090_circ_g.2 ATMG00090_circ_g.3 ATMG00090_circ_g.4 ATMG00090_circ_g.5 ATMG00090_circ_g.6 Mt_circ_igg.7 ATMG00090_circ_g.8 ATMG00090_circ_g.9 ATMG00090_circ_g.10 ATMG00090_circ_g.11 Mt_circ_igg.12 Mt_circ_igg.13 Mt_circ_ag.14 ATMG00110_circ_g.1 ATMG00110_circ_g.2 Mt_circ_ig.3 Mt_circ_ig.4 Mt_circ_igg.5 ATMG00160_circ_g.1 ATMG00160_circ_g.2 ATMG00160_circ_g.3 ATMG00160_circ_g.4 Mt_circ_igg.5 Mt_circ_ig.6 ATMG00180_circ_g.1 ATMG00180_circ_g.2 ATMG00180_circ_g.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_ig.6 Mt_circ_ig.7 Mt_circ_ig.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_igg.11 Mt_circ_igg.12 Mt_circ_igg.13 Mt_circ_igg.14 Mt_circ_igg.15 ATMG00480_circ_g.1 ATMG00510_circ_g.1 ATMG00510_circ_g.2 ATMG00510_circ_g.3 ATMG00510_circ_g.4 ATMG00510_circ_g.5 ATMG00510_circ_g.6 ATMG00510_circ_g.7 ATMG00510_circ_g.8 ATMG00510_circ_g.9 ATMG00510_circ_g.10 Mt_circ_ag.11 ATMG00513_circ_g.1 ATMG00513_circ_g.2 ATMG00580_circ_g.1 ATMG00580_circ_g.2 ATMG00580_circ_g.3 ATMG00580_circ_g.4 ATMG00580_circ_g.5 ATMG00580_circ_g.6 ATMG00580_circ_g.7 ATMG00580_circ_g.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 ATMG00640_circ_g.1 Mt_circ_ig.2 Mt_circ_igg.3 Mt_circ_igg.4 Mt_circ_igg.5 Mt_circ_igg.6 Mt_circ_ig.7 Mt_circ_ig.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 Mt_circ_ig.12 Mt_circ_ig.13 Mt_circ_ig.14 Mt_circ_ig.15 Mt_circ_ig.16 Mt_circ_ig.17 Mt_circ_ig.18 Mt_circ_ig.19 Mt_circ_ig.20 Mt_circ_ig.21 Mt_circ_ig.22 Mt_circ_ig.23 Mt_circ_ig.24 Mt_circ_ig.25 Mt_circ_ig.26 Mt_circ_ig.27 Mt_circ_ig.28 ATMG00660_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 ATMG00670_circ_g.1 Mt_circ_ig.2 Mt_circ_igg.3 Mt_circ_igg.4 Mt_circ_igg.5 Mt_circ_ig.6 ATMG00780_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_igg.6 Mt_circ_igg.7 ATMG01060_circ_g.1 Mt_circ_ig.2 Mt_circ_ig.3 Mt_circ_ig.4 Mt_circ_ig.5 Mt_circ_ig.6 Mt_circ_ig.7 Mt_circ_igg.8 Mt_circ_igg.9 Mt_circ_igg.10 Mt_circ_igg.11 Mt_circ_igg.12 Mt_circ_ig.13 Mt_circ_ig.14 Mt_circ_ig.15 Mt_circ_ig.16 Mt_circ_ig.17 Mt_circ_ig.18 Mt_circ_ig.19 Mt_circ_ig.20 Mt_circ_ig.21 Mt_circ_ig.22 Mt_circ_igg.24 Mt_circ_ig.25 ATMG01320_circ_g.1 ATMG01320_circ_g.2 ATMG01320_circ_g.3 Mt_circ_ig.4 Mt_circ_igg.5 Mt_circ_ig.6 Mt_circ_igg.7 Mt_circ_igg.8 ATMG01360_circ_g.1 ATMG01360_circ_g.2 ATMG01360_circ_g.3 ATMG01360_circ_g.4 ATMG01360_circ_g.5 ATMG01360_circ_g.6 ATMG01360_circ_g.7 Mt_circ_igg.8 Mt_circ_ig.9 Mt_circ_ig.10 Mt_circ_ig.11 Mt_circ_igg.12 Mt_circ_igg.13 Mt_circ_ig.14 ATMG01380_circ_g.1 Mt_circ_igg.2 Mt_circ_igg.3 ATMG01380_circ_g.4 Mt_circ_igg.5 Mt_circ_igg.6 ATMG01390_circ_g.1 ATMG01390_circ_g.2 ATMG01390_circ_g.3 ATMG01390_circ_g.4 ATMG01390_circ_g.5 ATMG01390_circ_g.6 ATMG01390_circ_g.7 ATMG01390_circ_g.8 ATMG01390_circ_g.9 ATMG01390_circ_g.10 ATMG01390_circ_g.11 ATMG01390_circ_g.12 ATMG01390_circ_g.13 ATMG01390_circ_g.14 ATMG01390_circ_g.15 ATMG01390_circ_g.16 ATMG01390_circ_g.17
Support reads 103
Tissues leaf, aerial, inflorescences, whole_plant
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCCAATTCTCGCTGGAGGTTCCTAATATATCCGGCCTGAATCACTCCCTCGTAAAAATCCCAG
CGCATATTAACTAAGAAGTGATTCAACCGGGTTAACctctccataataataggatccaccaatt
cttctgcgagagctactgtacccgaacagtagaaggggtggttaattatggtgtctactgatat
attaggaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTCCATAATAATAGGATCCACCAATTCTTCTGCGAGAGCTACTGTACCCGAACAGTAGAAGG
GGTGGTTAATTATGGTGTCTACTGATATATTAGGAAACATGTCCAGAACTGGCACTCCTGGCAG
AACGTCGTTATCTGCAGAATTCGTGGAACTGGCAAAAAGTAGATTCAGATTTCTCTGTCGTCGC
ATAGCTTATCCCCATTTTTTTTTCAGCAACTGAACGGGAAGTGGCTTAGGAAAGGACTAATCGG
ATGCGCTCGCCCAGCGAGAAAGGCCCTAACCCTTGCCGACCAAGAAAAAAAGAGAAGATAACGA
AAGGGAGACAAAGTTCCTAACAAAATCATAACACAAGGTACCCATTCCATCTATCATATCAGTC
GAGTCGATCCGATTCGTTCTTATCAGGCGGCAAGAGAGAACTTATGACTTCGCGGATGGAGAGG
GATTCGAACCCCCGGTATTCCTAGAAATACTTCGGTTTTCAAGACCGACTCTTTCAACCGCTCA
GACATCCATCCCTCGCTTTTGTTCAATTATAAATATAAATAAAAGAAAGAAGAACTTTAATGGA
GATTTATAGCATCATTCAAGTAAATACAGATTAAGATCGTAAAAACATAAGCTTGTAATATAGC
TACACCTAATTCCAGACCGGTTAATGCAAGAACTATAAATAAAGGACCAAGAGCCCCTATAAAA
TAGAAAATATCATTCATACATAGCATAGTCCAAGCGAACCCACTTAAAATCTTTACTAAACTAT
GACCGGCCATCATATTAGCAAATAAACGTATTCCTAAGCTTAATGCGCGAAAACAATAAGAAAT
TAGCTCAAGGAGTACTAAAAAAGGTGCTAACGGCAGTGGGACTCCTGCGGGTAATAAAAAGCTG
AAAAAATGAAGCCCATGTCTTTGAAATCCCACTATAGTAATGCCAATAAAAATCGAAAATGAGA
GAGCCAAAGTAATGAGAAAATGACTTGTCACTGTGAAGCTATAAGGTATCATACCCTGAAGATT
ACAAAATAACAAAAAAAGAAAAGTGACCAAGATGCAAGGGAAAAACATTTGTTTCACATTCCCG
GAAAGACCACCTATTTGTTCCTTTACCAGGTTCAGCACGAAATCATAAAGAAGCTCTACCAAGG
ATTGCCAAGCATTTGGGACTAAGTTTCCTCCTCCCTTTTTAGTAACAAAATGAATCAGAAGTAG
GAAAAAACTCAGAGTTAGCAGCATGAACAAAGATGGATTTGTGAATGAGAAATAGAAGTTTCCG
ATATGCATAGGAATCAATGGGACAATCTCAAATTGGTCCAGTGGGGAGGGGATTTCCATAAGTT
TCATATAGTTAGAAAAACAGGCGTCGTGATATTTTTCAATAAAATTGACAGGGCCAGGAACGCC
CAAATTCTGCATATACCAGTTATTAACGTACGTAGATAAATTAAGCGATTCCCTAAAAAAAATA
AGGTCCAGTTTGCTCCCGAGGAGTTCCGCGGGAGTATGATCCAATTCTCGCTGGAGGTTCCTAA
TATATCCGGCCTGAATCACTCCCTCGTAAAAATCCCAGCGCATATTAACTAAGAAGTGATTCAA
CCGGGTTAAC
Conservation Information
Conserved circRNAs NA
PMCS 1.296539257
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017