Detail information of Os10g0558750_circ_ag.2


General Information
CircRNA Name Os10g0558750_circ_ag.2
ID in PlantcircBase osa_circ_007991
Alias Os_ciR1056
Organism Oryza sativa
Position chr10: 21993000-21997503  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os10g0558700_circ_igg.1 Os10g0558725_circ_igg.1 Os10g0558725_circ_ag.1 Os10g0558725_circ_g.1 Os10g0558725_circ_ag.2 Os10g0558725_circ_ag.3 Os10g0558750_circ_igg.1 Os10g0558750_circ_igg.2 Os10g0558750_circ_ag.1 Os10g0558900_circ_igg.1 Os10g0559300_circ_igg.1 EPlOSAG00000044329_circ_ig.1
Support reads 40
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGAGTATTCCTTCTTGGCATCCAGTGGCTGACTGAAAAACTCAACCAAGTCGTTCTTGAGATT
TGCAATCACTTCATCTGGCACTCCATGGTTGATGAGctgaaagaacccccaatactggcaggca
gatctcagcttcacacattcttctgatgattgcggagaaagcaacttattgagatcgatgatcg
gaatcgcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 767
Transcript exons: 21993000-21993193,21995911-21996124,21996815-21996985,21
997316-21997503
CTGAAAGAACCCCCAATACTGGCAGGCAGATCTCAGCTTCACACATTCTTCTGATGATTGCGGA
GAAAGCAACTTATTGAGATCGATGATCGGAATCGCCTCACCATGGTAGTTGCTGATGACCTCCT
CAGAACTAGCCTCTGGCCTGATGTATCTTTCAGGTATGTGTTCATCTGGACCATTGCAAGTTTT
TGCTTCCATCAAGCTCTGCTGTGAAGTACTCTGTCAGCAAATCCTGGTAGCTTATTGTTTTGTA
TTTCACTTTACCATCTTTCACAAAGTCCGGCAGAGGGCTGATCACCATATCCTGGCACGGATAG
TAGAACAGTGCCGCTGAAATCCTCTCTCTGCTTGGATGTACCACGGCCCTGTGCTCAACACTTC
TGAACTTTCCATTACTCAGGATCTCTCAAGTGTGTCGCCAATGTTAACGATGAGTGCACCATTC
AGAGCATTCACGGAGAACCATTTGCCATCCTTGTTGATCTGCAGGCCCTGTACATCATTCACCT
GGAGAAGCAGTGTCAAGCCACCTGGATCAGTGTGCGGTGACAAACCCAACACCTTGTCAGCTTT
CAATGAAGGTATAGCATGTCTGCCCAGTCTAGTTTCTGGTTGTCGGACACAACGAAGGCCTGTC
CATAACCTTCAAGGTTATTGGGCAGCTGTGAGTATTCCTTCTTGGCATCCAGTGGCTGACTGAA
AAACTCAACCAAGTCGTTCTTGAGATTTGCAATCACTTCATCTGGCACTCCATGGTTGATGAG

Transcript length: 795
Transcript exons: 21993000-21993226,21995927-21996124,21996815-21996998,21
997318-21997503
CTGAAAGAACCCCCAATACTGGCAGGCAGATCTCAGCTTCACACATTCTTCTGATGATTGCGGA
GAAAGCAACTTATTGAGATCGATGATCGGAATCGCCTCACCATGGTAGTTGCTGATGACCTCCT
CAGAACTAGCCTCTGGCCTGATGTATCTTTCAGGTATGTGTTCATCTGGACCATTGCAAGTTTT
TGCAAGCTCCTGCACATTAGGCACTGGGAGAGAACCTGTGAAGTACTCTGTCAGCAAATCCTGG
TAGCTTATTGTTTTGTATTTCACTTTACCATCTTTCACAAAGTCCGGCAGAGGGCTGATCACCA
TATCCTGGCACGGATAGTAGAACAGTGCCGCTGAAATCCTCTCTCTGCTTGGATGTACCACGGC
CCTGTGCTCAACACTTCTGAACTTTCCATTACTCAGGATCTCTCAAGTGTGTCGCCAATGTTAA
CGATGAGTGCACCATTCAGAGCATTCACGGAGAACCATTTGCCATCCTTGTTGATCTGCAGGCC
CTGTACATCATTCACCTGGAGAAGCAGTGTCAAGCCACCTGGATCAGTGTGCGGTGACAAACCC
AACACCTTGTCAGCTTTCAAGCACGGTGGATAGAAGGTATAGCATGTCTGCCCAGTCTAGTTTC
TGGTTGTCGGACACAACGAAGGCCTGTCCATAACCTTCAAGGTTATTGGGCAGCTGTGAGTATT
CCTTCTTGGCATCCAGTGGCTGACTGAAAAACTCAACCAAGTCGTTCTTGAGATTTGCAATCAC
TTCATCTGGCACTCCATGGTTGATGAG

Transcript length: 864
Transcript exons: 21993000-21993211,21995908-21996124,21996815-21997038,21
997293-21997503
CTGAAAGAACCCCCAATACTGGCAGGCAGATCTCAGCTTCACACATTCTTCTGATGATTGCGGA
GAAAGCAACTTATTGAGATCGATGATCGGAATCGCCTCACCATGGTAGTTGCTGATGACCTCCT
CAGAACTAGCCTCTGGCCTGATGTATCTTTCAGGTATGTGTTCATCTGGACCATTGCAAGTTTT
TGCAAGCTCCTGCACATTAGTTCCTTCCATCAAGCTCTGCTGTGAAGTACTCTGTCAGCAAATC
CTGGTAGCTTATTGTTTTGTATTTCACTTTACCATCTTTCACAAAGTCCGGCAGAGGGCTGATC
ACCATATCCTGGCACGGATAGTAGAACAGTGCCGCTGAAATCCTCTCTCTGCTTGGATGTACCA
CGGCCCTGTGCTCAACACTTCTGAACTTTCCATTACTCAGGATCTCTCAAGTGTGTCGCCAATG
TTAACGATGAGTGCACCATTCAGAGCATTCACGGAGAACCATTTGCCATCCTTGTTGATCTGCA
GGCCCTGTACATCATTCACCTGGAGAAGCAGTGTCAAGCCACCTGGATCAGTGTGCGGTGACAA
ACCCAACACCTTGTCAGCTTTCAAGCACGGTGGATAGTAGTTCATCCTCAAACCCCTAGCTTGC
CCTTCAAATACACCCCTTGAATCGGTAGGACAGACTTGAAGGTATAGCATGTCTGCCCAGTCTA
GTTTCTGGTTGTCGGACACAACGAAGGCCTGTCCATAACCTTCAAGGTTATTGGGCAGCTGTGA
GTATTCCTTCTTGGCATCCAGTGGCTGACTGAAAAACTCAACCAAGTCGTTCTTGAGATTTGCA
ATCACTTCATCTGGCACTCCATGGTTGATGAG

Genomic sequence CTGAAAGAACCCCCAATACTGGCAGGCAGATCTCAGCTTCACACATTCTTCTGATGATTGCGGA
GAAAGCAACTTATTGAGATCGATGATCGGAATCGCCTCACCATGGTAGTTGCTGATGACCTCCT
CAGAACTAGCCTCTGGCCTGATGTATCTTTCAGGTATGTGTTCATCTGGACCATTGCAAGTTTT
TGCAAGCTCCTGCACATTAGGCACTGGGAGAGAACCAATGGCTCTTGCTCCCGCCATTGAAATT
CCCAAGTTTCTGCAGCAAGTGTTTTCTTTCCTTTTTTTGGGCTAGCAGTTGTTGTAGGTTGCAT
ATTGCATGGATATCCACATATATAGACCTTCAGAAGAACACACTTTGACTGTACGGTTTAGTGT
TTATCTTTCCAGGTGTTTACACTTTACACTAGCTAAATTTTAGCATAAGAGGAACACATCTATG
TTTAAAGCGATATATATCATAGATGTGGAAGGCAGTGTCACCAACCACCCAATCAACAGACAAA
GATCAAGTCTCTGATCCTGACTGATATACCTGCTTCAAGCTCTCCAATTGTACACCATCTTCCA
TCTTCTTGTGAAAAGAGCCCTTGCAATTTTCTCATCTAGTGTGCCTAGCCTGTCGTCAGCGACG
ACTAACCGTGGATAAAAGGTGGATGATGCAGTAAAAGTCCCTCTTTCTCAAATGCCGATCAACT
TGTATGATGTGAACAGTTATATCATTCCTCTCCAGAAAAAAGAAAAGGTTGTATCATGCTACAG
AACAATCATTCTATCTTAATTCTTAATAAGAAGATATTCCCATTTCTGGATAGTGTCTAAATTG
GTAATCAAACTCCAACACTATTTCATAAATCGTACCCCAAAAAAATTCCATTCTGAAATACCGG
ATTATGAACTAACAACAAGGCTCAGACACATGCCCAGGTTTACCACGTATACTCTTTGAGTTGA
TTTCACAAGATTAATCAAGCTTCGTATCTCTTTTGGTTATTTATTTTACAACTTTCAAGTGGTT
AGCCTAAAGTTAAGAAAAAAAATATGTTTATATTTAGGACATAATACACACTTTGAACGTGACG
TCATTTTTTAGTGTGTAATTTTTTAAAAAGGAAATTAAGACGAGTGATCAAAGTGAGAAAATAA
ATAGTGTCCGTACCGGTTCTTTTTCTTTTTAATGGAGGGAGTAGTCACTTTTCCCCTGCAGGGT
CTCATATAGATGAGGCAAATTTTGCTACGTGTGGTTTTAGCCTTACGACACTGCCTAAACTCAC
TTTTGGGGAAAACACTCCATAAACGTGGTAATTTGACAGTAGACACTGCACCGATTAAAATAAT
AATTTCTGGTTGAGGAGGAGAGAGAAATCATGTGAAATGTCAAAAATGCCCTTAGGCCCACATG
TCATCTCTCCTATCTCTCTTCTCTTTCTATCCCCTCCTTCCAGCTCGTCCGCAATGGCCTCCAC
CGCACCTCCCGCTTCCACGACGCCATGCGGACCATCCACGCCGTCGTGGCGGTGGCTGGCGATG
AAGGGGTGGCGCAGCGAGGCGAGGATGGTGCTCGACCGGACGTCGGACACCGCCGGCCGAGGCT
GAGCAGCGGCTGCAGGAGATCGAGGACGTCGTCGCCGCCAGCTCCGTCGGCGGCAACGGCGGCG
GTGCGCGGAAGGAGGTGGCGACCAAGCCCGGCATGCAGCGGGTGCTCACCATCGTGCTGATGCT
GCAGTTCTTCCAGCAAGCCTCCGACATCGACTCCGTGGTACTGTACGGCCCGGGCGTGCTCGCC
GCCGCCGGCGTGACGCCCAACACCCTCCTCCTGGGCCTCAACGTGGTGTTCGGCGTCGCCAAGG
CGAGCTCCATCCTCATCGCCATGGCGCTCACCGCCCGCGTGCGGCGCCGTCCTCTGCTTCTCGC
CAGCACGGGCGGCATGACCGCCTCTCTCCTCGTGCTCGGCTCGGTGTTCGCCGCGTTCGGCGGC
GCGAGGGACGACGCGGCGGTGGCCGCCGTCGCCGTCGCTGTGGTGGTGGCGTTCGCGTGCGCGT
TCTCCGTCGGGATCGGGCCGTTGGCGTGGGTGTACAGCTCGGAGATCCTGCCGCTGCGGCAGCG
CGGGCAGGGCGCCAGCGTCGGCACCGCCATGAACCGCGTCACGTGGTCACCATGACGTTCGTCT
CGCTCTACGGAGCCATCACCATGGCCGACGCATTCTACCTCTACATCGCCATCGCCGTGCGTCG
TTCGTGTTCATCTACGCCTGCCTGCAGACACTAGAAGGAGGGGGACAGAGAGAAGAGAGATAGG
AGAGATGGCACGTGGGTCCAAGGGTATTTTTAACCTTTCACGCGATTTCTCTCTCCTCTTCAAC
TGAAAATTATTATTTTATTCAGCGCGGTGTTCACTGGCAAATTACCACGTTTATAAAGTGTTTT
CCCTCGTAAGTGAGTTTGTGCAGTGTCCTAGAGCTAAAACCACATATAAGCAGTATCCTATAGC
AAAATTTGCCCCCAGATAATAGTTCGGAGCGTTTTACAGTAATTACTACTTTATTGAAGCTGGT
GTTAAGAGGCAAACTTCCATGTCTGTTTCATCAAACTGAACATGTTCAACGCAGTTTACAGGCA
TAAGCTAATTATGCATAAAGCTTGATGCCTGAATACATTATTCTTCACGACATATATTTCCTAT
ATCCCAAATTTTTTAAAAAAACATAGTACACGATGTAACATTTTCTAATTTATGGTACTATGAT
GTATCATATATGTACTATGTTTATTTATTTTAGGATGAAGAGAGTAGATAGCAGATACAGTAAG
TAGGACACAACCTGAAAGCAGGTTCTTCTTATAAAATTGTTACATGCATCATGGTCGATGGCTA
CGGTTCCAGCTTCATTTTCTTTAGCCGGTTCCTTCCATCAAGCTCTGCTGTGAAGTACTCTGTC
AGCAAATCCTGGTAGCTTATTGTTTTGTATTTCACTTTACCATCTTTCACAAAGTCCGGCAGAG
GGCTGATCACCATATCCTGGCACGGATAGTAGAACAGTGCCGCTGAAATCCTCTCTCTGCTTGG
ATGTACCACGGCCCTGTGCTCAACACTTCTGAACTTTCCATTACTCAGGATCTGCACACATCAA
CAGCGCACATCGACCGTACTTGTACATCAGAAAAACATGTTGATCCAAAAGTTGAGCATCAGCG
GCTTTGATTGTCTACTCATTGGCTTATCGGCCACAACCAAAATGATTTTGTACTGATCATTTGT
TTTAAGCTATTTGTTAAATTTATTTCTTAAAAATATTTTGATTCACAATAAAATAATCTGCCTA
ATATCCTATATCAAACGGGATTAGTTCTTTTTTTTTAAATAACTAGAAAAAATGCTCGTGTGTT
GCAACTGGTGGAGTCTATTTTAATATTATTATTGTTATATGGTTTAGTTAAGATGAAATTTATT
GTGGGAGTTCGTTTGGATATATATATATATATATATATATATATATATATATTTAGAAAATCAT
GAGCTGCAGTTAGGAGTCCGATCACCTCATGTTAGCATGCGAGTTTTTTAAACAGATTTCTTAT
ATTATTCCTTCTGTATTATCAAAAGTGAACTATCTTAAAAACCGACTCAAATACGGATATGTAT
TTCCAAAAGCGAACGAACTTAGAAACTGACTCATACATGGATGACGCACCAAAATACCGGGAAA
AATATCTTCAACTTTTATAATAGTATAAAGATAAAAGCTTTATTTAACTCATGAAATTACATCG
ATACGATACAATTGCCCCGAGAACGGGATTAGTCATTACCTCAAGTGTGTCGCCAATGTTAACG
ATGAGTGCACCATTCAGAGCATTCACGGAGAACCATTTGCCATCCTTGTTGATCTGCAGGCCCT
GTACATCATTCACCTGGAGAAGCAGTGTCAAGCCACCTGGATCAGTGTGCGGTGACAAACCCAA
CACCTTGTCAGCTTTCAAGCACGGTGGATAGTAGTTCATCCTCAAACCCCTAGCTTGCCCTTCA
AATACACTTAACAACGACTTCGGCTCAACACCAACGGCCTTGGCCATGAATTGCAGCAGGCAGA
GTCCAATATTTTCTGTCTCTGATGAGTATGCATCAATGGAATGCCTAATTTTCAGATATTTCAA
GTTAATAAATGGACATATGTATGCTTTAAAAGTTATAATGAACATATGCTTATCAATGGAGTAA
TTAGTTGCATAATAATTTGTCGGTAGTATCACCTGAAAGAGGCAGGGTAATTGGGCCAGAATCT
CAAGTCCCTTGAATCGGTAGGACAGACTTGAAGGTATAGCATGTCTGCCCAGTCTAGTTTCTGG
TTGTCGGACACAACGAAGGCCTGTCCATAACCTTCAAGGTTATTGGGCAGCTGTGAGTATTCCT
TCTTGGCATCCAGTGGCTGACTGAAAAACTCAACCAAGTCGTTCTTGAGATTTGCAATCACTTC
ATCTGGCACTCCATGGTTGATGAG
Conservation Information
Conserved circRNAs osi_circ_002943*
PMCS 1.032026182
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015