Detail information of Os10g0558750_circ_igg.2


General Information
CircRNA Name Os10g0558750_circ_igg.2
ID in PlantcircBase osa_circ_007989
Alias NA
Organism Oryza sativa
Position chr10: 21991941-21992123  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os10g0558700_circ_igg.1 Os10g0558725_circ_igg.1 Os10g0558725_circ_ag.1 Os10g0558725_circ_g.1 Os10g0558725_circ_ag.2 Os10g0558725_circ_ag.3 Os10g0558750_circ_igg.1 Os10g0558750_circ_ag.1 Os10g0558750_circ_ag.2 Os10g0558900_circ_igg.1 Os10g0559300_circ_igg.1 EPlOSAG00000044329_circ_ig.1
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-TC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTTTTAGATAATGGAAGCTTTTATTGAACTCATCCAGTTACATCAAAGTTCTTTGACAAGTG
AAAGCATAATTAGTTCTTGGTCGGTACagtacaaaggtgcaagagaggtaggccatccaacaac
aattttcagaagcttttaggtacgttctttcttctttggtgcttccacaagttct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGTACAAAGGTGCAAGAGAGGTAGGCCATCCAACAACAATTTTCAGAAGCTTTTAGGTACGTTC
TTTCTTCTTTGGTGCTTCCACAAGTTCTTTTTTTTAGATAATGGAAGCTTTTATTGAACTCATC
CAGTTACATCAAAGTTCTTTGACAAGTGAAAGCATAATTAGTTCTTGGTCGGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.577584167
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017