Detail information of Os10g0558900_circ_igg.1


General Information
CircRNA Name Os10g0558900_circ_igg.1
ID in PlantcircBase osa_circ_007992
Alias Os_ciR3616
Organism Oryza sativa
Position chr10: 21996815-22011356  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os10g0558700_circ_igg.1 Os10g0558725_circ_igg.1 Os10g0558725_circ_ag.1 Os10g0558725_circ_g.1 Os10g0558725_circ_ag.2 Os10g0558725_circ_ag.3 Os10g0558750_circ_igg.1 Os10g0558750_circ_igg.2 Os10g0558750_circ_ag.1 Os10g0558750_circ_ag.2 Os10g0559300_circ_igg.1 EPlOSAG00000044329_circ_ig.1
Support reads 2
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTTGCGCGCATAGTTGAACAACGCCGCTGAAAGACGTTCTTTGTTTGGATGTATCACAGCCCT
GTGCTCAACGCTTCTGAACTTTCCGTTACTCAGGATctcaagtgtgtcgccaatgttaacgatg
agtgcaccattcagagcattcacggagaaccatttgccatccttgttgatctgcaggccctgta
catcattc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.92243136
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015