Detail information of Os10g0558725_circ_ag.3


General Information
CircRNA Name Os10g0558725_circ_ag.3
ID in PlantcircBase osa_circ_007988
Alias Os_ciR1208
Organism Oryza sativa
Position chr10: 21990238-21992775  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method PcircRNA_finder, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os10g0558700_circ_igg.1 Os10g0558725_circ_igg.1 Os10g0558725_circ_ag.1 Os10g0558725_circ_g.1 Os10g0558725_circ_ag.2 Os10g0558750_circ_igg.1 Os10g0558750_circ_igg.2 Os10g0558750_circ_ag.1 Os10g0558750_circ_ag.2 Os10g0558900_circ_igg.1 Os10g0559300_circ_igg.1 EPlOSAG00000044329_circ_ig.1
Support reads 49/17
Tissues root/seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGTGTACTCCTTCTTGGCGTCCAGTGGCTGGCTGAAGAAATCAACAATGTCTCTCTTGAGGTT
TGCAATCACTTCATCTGGCACTCCATGGTTGATGAGcagaaagaacccccaatactggcaggca
gatctcagcttcacacactcctcttctgatgattgcggacaaagcaatttcttgagatcgatga
tcggaatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGAAAGAACCCCCAATACTGGCAGGCAGATCTCAGCTTCACACACTCCTCTTCTGATGATTGC
GGACAAAGCAATTTCTTGAGATCGATGATCGGAATCGCCATGTCACCTTGGTAGTTGTTGATGA
CCTCCTCAGAACTAGCCTCTGGTCTGATGTACCTTTCAGGTATGTGTTCATCTGGATCATTGCA
AATTTCTGCAAGCGCCTGCACATTAGGCACTGGGAGAGAACCAACGGATCTTGCTCCCGCCATT
GCAATTCCCAGTTTCTGCACTAAGTGTTTTCTTTTCTTTTCCTTTTTTGGCAAGCAGTTGTTCT
AGGCTGTATACTGCATATAACGTGTAGAATATACCATATTTATAGACCTTCAGAAGAACACTCA
CTTGATTTTATGGTTTACTGTTTAGGTATCCAGGTGTTTACACTAGCTAAATCATGCCTTTTTT
TTTTGAAGTAAAAGGTAGAGAGTCTCTACCTTATGGCATTAGAGGAACACATCTATGTCATTAG
AGGAACACATCTATGTCAAAAGGGATTTTTTTTAAAGATAATGGATAGAAAAACTGGTGGATAT
AGATGGCCAACTGAAAGCAACACATACAGTATCAGAGACGGGGAAGGCAGAGTCTCTTATCCTG
ATATGGCTTCAAGCTCTTCAATTGTAGTACACTATCTTCCATCTTCACGTCAAAAGAGCCCTTG
GAATTTTCTCCATCAAGTGTGACTCGCCTGCCATCAGCGATGACTAACCATGGAAAAAAGCAGG
GTGATGTTCTCAAATTCCAATCACCTTGTCTGTCTGCTTCAACTGATGTGAACAGCTCTACCAT
TCCTCTCTCAAAGAAGAAAAGGTTGAATCATGCTACATAACAATCATTCTCTCTTAATTCTAAA
TAAGAGAACATGACATCCTACGTGCATATTTAGTTGTTGCTGTTTTCAACCTTACCAAATTTTG
ATATTGCCAAAGTTTGGTAAGGCAACAAACTAAACACACTTCAACCATTACTATCTTATTAAAT
TTTGGCAGCTCTAGAAGCTTCTTTTCTTAAAACTCTACTAGAATTTGGTAAAGACATCAAACTA
AACAAAGCCAACGCTACCGAAATGTAGTAATGCCAAAGTGTGCCAAAATTTAGCATGGAAGATG
GTGTACCTAATTTGTTAGTCTGAACTGAAATTCTATTATCGTACAGTTAATTCTTCTAGGCATC
AATGTTTATTTTTTGGATGTTTGCATCATAACCTGAGTACGGGCAGTTCCTGATATATGGGACA
AGACTCAAAATATCAGGTAAATCATCCTCATAACACAGGATTATTGGACACCTCTAGATATAAT
AAGCAGCAAATCTCAAGGACACAGCCTTGAAGCAGCTTCATCTCAGTATTTCACTACACTACTA
CAGGCATCGTGGTCATGGCTGCTATTCCAACTTCAACATCTCCAGTCTGTTCTTTCCATCAAGC
TGTTGTGTGAAGAATTGTGTCATGAAATCAAGGTAACTAATTGATCTGTAATTCACTTTACCAT
CTTTCACAAATTCCGTCAGAGGTCTGATCACCATATTCTCACACGGATAGTGGAACAGTGATGC
TGAAATCCGCTCCTTATTTGGGTTTATCACGGCCCTGTGCTCAACACTTCTGAACTTTCCGTTA
CTTAGGATCTGTACATATCAATAGCACATCACTCACATCAGTACAAAGGTGCAAGAGAGGTAGG
CCATCCAACAACAATTTTCAGAAGCTTTTAGGTACGTTCTTTCTTCTTTGGTGCTTCCACAAGT
TCTTTTTTTTAGATAATGGAAGCTTTTATTGAACTCATCCAGTTACATCAAAGTTCTTTGACAA
GTGAAAGCATAATTAGTTCTTGGTCGGTACCTCAAGTGTGTCGCCAATGTTAACGATGAATGCA
CCATTCGGAGCGTCTACGGATAACCACTTGCCATCTTTCTTGATCTGCAGGCCCTGCACGTCGT
TAACCTGGAGCAGCAGTGTTAGGCCAACCACATCAGAGTGCGGCGAAATGCCCATCACCTTGTC
AGATTGCAGGCACGGTGGGTAGTAGGTCATCCTTAAGCCTCGAGGCTGCTCTTCAAATATGCCT
AAAAGAGCCTCTGGCTTAGCGCCCACAGCCTTAGCCATGAACTCAAACAAGCAGAGTGCCAGGC
TTTTAGTCTCTGATGAGTATGCATCAAGGGATCGCCTATTTCCAGACATCTCCAGTTAAGAAGA
GACAGATGCCTATCAAAAGCTAAATTACACATTTTATTTGGGTAGATCACCTGAAAGATGCAGG
GGAAGTCGGCCAGAACCTCAAGTCCCTTGAATCGCTAGGATGGACTTGAAGATACAGCATGTCT
GCCCAGTCAAGTTTCTGGTCCTCGGAGAAAACGAGGGCCTGTCCATAGCCTTCGAGGCTGTTGG
GTAGCTGTGTGTACTCCTTCTTGGCGTCCAGTGGCTGGCTGAAGAAATCAACAATGTCTCTCTT
GAGGTTTGCAATCACTTCATCTGGCACTCCATGGTTGATGAG
Conservation Information
Conserved circRNAs osi_circ_002943*
PMCS 0.979723701
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017