Detail information of Os10g0558725_circ_g.1


General Information
CircRNA Name Os10g0558725_circ_g.1
ID in PlantcircBase osa_circ_007986
Alias NA
Organism Oryza sativa
Position chr10: 21989763-21990010  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os10g0558725
Parent gene annotation Hypothetical protein. (Os10t0558725-00)
Parent gene strand +
Alternative splicing Os10g0558700_circ_igg.1 Os10g0558725_circ_igg.1 Os10g0558725_circ_ag.1 Os10g0558725_circ_ag.2 Os10g0558725_circ_ag.3 Os10g0558750_circ_igg.1 Os10g0558750_circ_igg.2 Os10g0558750_circ_ag.1 Os10g0558750_circ_ag.2 Os10g0558900_circ_igg.1 Os10g0559300_circ_igg.1 EPlOSAG00000044329_circ_ig.1
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0558700-01:1
Os10t0558700-02:1
Os10t0558700-03:1
Os10t0558700-01:1
Os10t0558725-00:1
Os10t0558700-02:1
Os10t0558700-03:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGTGTACTCCTTCTTGGTGTCCAGTGGCTGGCTAAAGAAATCAACAATGTCTCTCTTCAGGTT
TGCAATCACTTCATCTGGCACTCCATGGTTAATGAGctgaaagatgctggagaagtgggccaga
accttaggtcccttgaatcgctaggatggacatgaagatacagcatgtctgcccagtcaagttt
ctggtcct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAAAGATGCTGGAGAAGTGGGCCAGAACCTTAGGTCCCTTGAATCGCTAGGATGGACATGAA
GATACAGCATGTCTGCCCAGTCAAGTTTCTGGTCCTCAGAGAAAACAAAGCTCTGTCCATAGCC
TTCTAGGCTATTCGGTAGCTGTGTGTACTCCTTCTTGGTGTCCAGTGGCTGGCTAAAGAAATCA
ACAATGTCTCTCTTCAGGTTTGCAATCACTTCATCTGGCACTCCATGGTTAATGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.21733871
Functional Information
Coding potential Y
Potential coding position 21990000-21989822(+)
21989838-21989982(-)
Potential amino acid sequence MVNELKDAGEVGQNLRSLESLGWT*(+)
MLYLHVHPSDSRDLRFWPTSPASFSSLTMECQMK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017