Detail information of Os10g0558750_circ_igg.1


General Information
CircRNA Name Os10g0558750_circ_igg.1
ID in PlantcircBase osa_circ_043293
Alias NA
Organism Oryza sativa
Position chr10: 21991938-21992123  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRI-long
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os10g0558700_circ_igg.1 Os10g0558725_circ_igg.1 Os10g0558725_circ_ag.1 Os10g0558725_circ_g.1 Os10g0558725_circ_ag.2 Os10g0558725_circ_ag.3 Os10g0558750_circ_igg.2 Os10g0558750_circ_ag.1 Os10g0558750_circ_ag.2 Os10g0558900_circ_igg.1 Os10g0559300_circ_igg.1 EPlOSAG00000044329_circ_ig.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTTTTTTTAGATAATGGAAGCTTTTATTGAACTCATCCAGTTACATCAAAGTTCTTTGACAAG
TGAAAGCATAATTAGTTCTTGGTCGGTACatcagtacaaaggtgcaagagaggtaggccatcca
acaacaattttcagaagcttttaggtacgttctttcttctttggtgcttccacaagtt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 186
Transcript exons: 21991938-21992123
ATCAGTACAAAGGTGCAAGAGAGGTAGGCCATCCAACAACAATTTTCAGAAGCTTTTAGGTACG
TTCTTTCTTCTTTGGTGCTTCCACAAGTTCTTTTTTTTAGATAATGGAAGCTTTTATTGAACTC
ATCCAGTTACATCAAAGTTCTTTGACAAGTGAAAGCATAATTAGTTCTTGGTCGGTAC

Genomic sequence ATCAGTACAAAGGTGCAAGAGAGGTAGGCCATCCAACAACAATTTTCAGAAGCTTTTAGGTACG
TTCTTTCTTCTTTGGTGCTTCCACAAGTTCTTTTTTTTAGATAATGGAAGCTTTTATTGAACTC
ATCCAGTTACATCAAAGTTCTTTGACAAGTGAAAGCATAATTAGTTCTTGGTCGGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.165468459
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study