Detail information of EPlOSAG00000044329_circ_ig.1


General Information
CircRNA Name EPlOSAG00000044329_circ_ig.1
ID in PlantcircBase osa_circ_007994
Alias Os10circ09689
Organism Oryza sativa
Position chr10: 22007338-22007831  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method SMALT, Segemehl
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os10g0558700_circ_igg.1 Os10g0558725_circ_igg.1 Os10g0558725_circ_ag.1 Os10g0558725_circ_g.1 Os10g0558725_circ_ag.2 Os10g0558725_circ_ag.3 Os10g0558750_circ_igg.1 Os10g0558750_circ_igg.2 Os10g0558750_circ_ag.1 Os10g0558750_circ_ag.2 Os10g0558900_circ_igg.1 Os10g0559300_circ_igg.1
Support reads 2
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCTGTCCCAGACCTGCCTAACAGTCTTCCCGCACTGCAAACTGACCCCATACAGGCCTGGGTA
TTGCACTCTAAGAGGAGTTTGCCCATACCACACATCattagcaatagagcaattaaacaacaca
tggcttgtttcccttttcccacagagtttacagaatccatcaccccctcccccctcccaggctc
ccacttct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTAGCAATAGAGCAATTAAACAACACATGGCTTGTTTCCCTTTTCCCACAGAGTTTACAGAAT
CCATCACCCCCTCCCCCCTCCCAGGCTCCCACTTCTTTTTGACCAATTCCACAGAACAAGGAAT
TTTCCCTCTCAAAGCTAAAAGACAGTTTTTAATCTTAAGAGGTACTTTACTTTGCCACACATCC
TGCATTTCTGCATCAATAACCCCTCCAAAACTTAACAATCTATACATGGACCTAGCATTGTACT
CCCCCTTCCTCCCAGCAGGCCAAATGATCCTATCACAGTCTGAAGTGATGTCAACAGCCCTCAA
CTTATTCTGAAGATCCTGCAGCTCCAACAAACTCCCCCCACACAAATGTCTTCTAAAACTTAGA
TCCCATTTCCCCCTGTCCCAGACCTGCCTAACAGTCTTCCCGCACTGCAAACTGACCCCATACA
GGCCTGGGTATTGCACTCTAAGAGGAGTTTGCCCATACCACACATC
Conservation Information
Conserved circRNAs NA
PMCS 0.41486777
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015