Detail information of Os04g0609700_circ_g.3


General Information
CircRNA Name Os04g0609700_circ_g.3
ID in PlantcircBase osa_circ_025158
Alias NA
Organism Oryza sativa
Position chr4: 30889833-30889961  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0609700
Parent gene annotation Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04
t0609700-01);Similar to H0702G05.10 protein. (Os04t0609700-02)
Parent gene strand -
Alternative splicing Os04g0609700_circ_g.1 Os04g0609700_circ_g.2 Os04g0609700_circ_g.4 Os04g0609700_circ_g.5 Os04g0609700_circ_g.6 Os04g0609700_circ_g.7 Os04g0609700_circ_g.8 Os04g0609700_circ_g.9 Os04g0609700_circ_igg.1 Os04g0609700_circ_g.2
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0609700-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCTTGCAACCTTCTTCCCACTGTACAGTAGCTTCCCACTTTGCATTTCGATCCATGCATACA
ctgcttagctagggccttttctattgtaccccaaactggaagtatgagaccacccaagatgtta
a
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 129
Transcript exons: 30889833-30889961
CTGCTTAGCTAGGGCCTTTTCTATTGTACCCCAAACTGGAAGTATGAGACCACCCAAGATGTTA
ACCTCTTGCAACCTTCTTCCCACTGTACAGTAGCTTCCCACTTTGCATTTCGATCCATGCATAC
A

Genomic sequence CTGCTTAGCTAGGGCCTTTTCTATTGTACCCCAAACTGGAAGTATGAGACCACCCAAGATGTTA
ACCTCTTGCAACCTTCTTCCCACTGTACAGTAGCTTCCCACTTTGCATTTCGATCCATGCATAC
A
Conservation Information
Conserved circRNAs NA
PMCS 0.350744897
Functional Information
Coding potential Y
Potential coding position 30889960-30889835(-)
Potential amino acid sequence MHGSKCKVGSYCTVGRRLQEVNILGGLILPVWGTIEKALAKQCMHGSKCKVGSYCTVGRRLQEV
NILGGLILPVWGTIEKALAKQCMHGSKCKVGSYCTVGRRLQEVNILGGLILPVWGTIEKALAKQ
CMHGSKCKVGSYCTVGRRLQEVNILGGLILPVWGTIEKALAKQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017