Detail information of Os04g0609700_circ_g.7


General Information
CircRNA Name Os04g0609700_circ_g.7
ID in PlantcircBase osa_circ_025162
Alias NA
Organism Oryza sativa
Position chr4: 30896504-30896998  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0609700
Parent gene annotation Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04
t0609700-01);Similar to H0702G05.10 protein. (Os04t0609700-02)
Parent gene strand -
Alternative splicing Os04g0609700_circ_g.1 Os04g0609700_circ_g.2 Os04g0609700_circ_g.3 Os04g0609700_circ_g.4 Os04g0609700_circ_g.5 Os04g0609700_circ_g.6 Os04g0609700_circ_g.8 Os04g0609700_circ_g.9 Os04g0609700_circ_igg.1 Os04g0609700_circ_g.2
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0609700-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATTATATAAACCTGCTCCATTATTCCTCTATACATGATGGTTAGGGCTTTTTTCCCATAATTG
CTGTCGTAGTTAAAAGCACTCAGAGAAGGTCCAGCCctattctggattttcggagccagtccca
aaaggcggttaagaaaacgagcaacatcatgcatatctgagtcaacaatccgaccagaaagctt
cccagcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTATTCTGGATTTTCGGAGCCAGTCCCAAAAGGCGGTTAAGAAAACGAGCAACATCATGCATAT
CTGAGTCAACAATCCGACCAGAAAGCTTCCCAGCAACTTTTCCATTGCCTGAGGAAAAACGTTA
AATGAGTCCAACACAGTCACAAACACTAAGGTATGGAAGAAAGAAAGTGTCTAATTGTTTCTGG
GTAAACTTACACACTACAGCATCCCTGATAATCCCAACTGATACTAGAGCAGCTTTTGCTTCAG
CAATGAACTCTTGGATGCTAGATTGATTGTCAGAACACCCCGGAGGAACAACTGGAAAAGAATC
CTGGTCATCTTGAAAGTAACTCTTAGAATGGTGAATAAAGCATGAAAAGGAAAACATATTCAAA
AACTATAGTGTAATTATATAAACCTGCTCCATTATTCCTCTATACATGATGGTTAGGGCTTTTT
TCCCATAATTGCTGTCGTAGTTAAAAGCACTCAGAGAAGGTCCAGCC
Conservation Information
Conserved circRNAs osi_circ_014764
PMCS 0.2439083
Functional Information
Coding potential Y
Potential coding position 30896936-30896506(-)
30896614-30896984(-)
Potential amino acid sequence MYRGIMEQDSFPVVPPGCSDNQSSIQEFIAEAKAALVSVGIIRDAVVCNGKVAGKLSGRIVDSD
MHDVARFLNRLLGLAPKIQNRAGPSLSAFNYDSNYGKKALTIMYRGIMEQDSFPVVPPGCSDNQ
SSIQEFIAEAKAALVSVGIIRDAVVCNGKVAGKLSGRIVDSDMHDVARFLNRLLGLAPKIQNRA
GPSLSAFNYDSNYGKKALTIMYRGIMEQDSFPVVPPGCSDNQSSIQEFIAEAKAALVSVGIIRD
AVVCNGKVAGKLSGRIVDSDMHDVARFLNRLLGLAPKIQNRAGPSLSAFNYDSNYGKKALTIMY
RGIMEQDSFPVVPPGCSDNQSSIQEFIAEAKAALVSVGIIRDAVVCNGKVAGKLSGRIVDSDMH
DVARFLNRLLGLAPKIQN(-)
MEKLLGSFLVGLLTQICMMLLVFLTAFWDWLRKSRIGLDLL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017