Detail information of BGIOSGA031532_circ_g.2


General Information
CircRNA Name BGIOSGA031532_circ_g.2
ID in PlantcircBase osi_circ_008613
Alias Chr10:22037570_22038698(MH63RS2), Chr10:22037570_22038701(MH63RS2), Chr10:22543988_22545119(ZS97RS2), Chr10:22037570_22038698(MH63RS2), Chr10:22037570_22038701(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 19165154-19166268  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2, CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2, CIRI2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA031532
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031532_circ_g.1 BGIOSGA031532_circ_g.3 BGIOSGA031532_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   NN-TA
Number of exons covered BGIOSGA031532-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTCCATCATGACGAGGAGTAGCGATACAGAATGGCAAAATGTGAAATAATATACCTGAAAAA
CTACACCAAATGAACCAGTACCAACTACACGTTCTGcctgaccaatcagaagctcagctagtac
acaaccaacagaccagatatcaattgctgtggtatactctgtagctccaaatattagttcagga
gccctata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGACCAATCAGAAGCTCAGCTAGTACACAACCAACAGACCAGATATCAATTGCTGTGGTATA
CTCTGTAGCTCCAAATATTAGTTCAGGAGCCCTATAATACCGCGAGCAAATGTATGATATGTTA
GGTTCACCAGGAACCTGAAATGGAGTGTCTGCATTGTCAAATACATGTGCAACACAGAATCAAC
ATGCTAGCAGGACAAGAAGAATACCAATTTCTTAGCACTTCCAAAATCACAAAGCTTCAGTTGA
TGTGTATGAGGATTGACCTGAAAAATCGATCAACTTGCAATGAGACAATTGCTTGTACAGCAGG
TTTACTTATATCACAACACATAAACAGCTGAAAATATTGCAGGCAATCATGCTTTTGCACAAGC
TGCAAATGCATGTTTCAATCTTAAACTCCATCATCTGTTTACAAGTACCCAAATAGTAAAAAAG
GAAAAAGAACACTTGCAAAGCATGCCCTGAGGAGGGGTGCCTGATAAAAATGAGTCTCATGATA
CATACCGTAGATTTTGAGGTTTAATATCTCGATGCCAGACACCAACAACACGATGGATATATGC
AAGGGCACGGCAAATCTATGAAAAATAGTAAAACACATTAGGACCAATAATTTCTTTAGAATCA
TGGATTTAACAGTTTGAAATGATCTACAAAGCTAAAAGTATAACTTATACAGACCTGATATGCA
TACAGCTTAACATGCAATATGGGCACACGCTGGTTCATCCGATTGTAGTATTTAGCAACACGAT
AAACTGTCTCTGAGACATATTCAAGTACAAGGTTGAGGTAAACTTCACCCCTCTCAGTCGTCGA
AAAGAAGTGATGCTTTAGCTGGACCACATTAGGATGGTCAAGCAGTTGCATTGTTTGGAGCTCT
CTGTTCTTATATCTTTTATCTTGCAGAACCTTCTTAATGGCAACAGTCTCTCCAGTTTCCAAGC
ACTTGGCCTGTTTGTATCAATAACTGGTCAATAACTTTATGCCCAAATATTGTAAATTTCCATC
ATGACGAGGAGTAGCGATACAGAATGGCAAAATGTGAAATAATATACCTGAAAAACTACACCAA
ATGAACCAGTACCAACTACACGTTCTG
Conservation Information
Conserved circRNAs osa_circ_007723
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021