Detail information of EPlOSAG00000028235_circ_ig.11


General Information
CircRNA Name EPlOSAG00000028235_circ_ig.11
ID in PlantcircBase osa_circ_009990
Alias Os_ciR7165
Organism Oryza sativa
Position chr11: 26559637-26560820  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os11g0661400_circ_igg.1 Os11g0661400_circ_igg.2 EPlOSAG00000028235_circ_ig.1 EPlOSAG00000028235_circ_ig.2 EPlOSAG00000028235_circ_ig.3 EPlOSAG00000028235_circ_ig.4 EPlOSAG00000028235_circ_ig.5 EPlOSAG00000028235_circ_ig.6 EPlOSAG00000028235_circ_ig.7 EPlOSAG00000028235_circ_ig.8 EPlOSAG00000028235_circ_ig.9 EPlOSAG00000028235_circ_ig.10 EPlOSAG00000028235_circ_ig.12
Support reads 2/1
Tissues root/shoot
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCGGAGACGCTTGACACCAGCAACTGGAGGTTCTAAAAGGGTGACAGGAGATGGCGGCACCAT
TTTAGGAATTTTGTCATTCAATGGATGCTGAAAAATctgctggaccagataatagaatccgttg
gtttattgatgaaatttctgagaattgtttgatgaattccttcttttccaagtgtatgaatgca
catgataa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCTGGACCAGATAATAGAATCCGTTGGTTTATTGATGAAATTTCTGAGAATTGTTTGATGAA
TTCCTTCTTTTCCAAGTGTATGAATGCACATGATAAGAGCACATTCTTTGTGTTATCGCTGCAT
GAAATGGAGTTGATGAACAACACATGAATACAAGAACACAAACATGTGAGAGAACAGATATCAT
GCTACAATTAAAGTTACGTCAGTGGAAGTCTGTAAGAATATGAACATGTGAGAGAGCAATGAAT
ATCATGCTACATTTAAACTACTTTATCAACCGTGTTGTGCCTATTATCTAATGAATGCTATATT
GGTATGAACTAATCATACAGAATATAGCGAATTAAGAATAACTAATGAATGCTATTTTAGTTTT
TTTTTAACAATGTAACATCGCAGATATGAAGCATATTAAGAACACAAAATAAACAGAATAAAAG
TTAAAGAATATAGGAAGGAAGATTAACCCAAAGTATATTACCTGAGGTAATAAGGAAAATTTTC
AAATGTAACATCAATATCATTTGGACTAATAATTCCTTGTTTCATCCCATCCTTAAAGGCTTGG
CATCTGCTTGGAGGTAAACTGGCTGAAGAGTTAAGATGCCTGATGAGATCCCTCTGATCTTCAA
GAGCTTTAAAAAGATCACCAGTCAAATCGAACTCTGATATAGTTGTTCCTGCAATCATCCTCAG
AACTGGCCTTATCTTATAAGTTGCAATCTTACCGATTTCAGCACCAAGATGAGCATCAGATCCA
AAGCCATTGTGTTGACTGATGTCGTTCGGGACAGCATCAGGAGATACTACGGGGGCTGCAGCCA
CATCTAATGGAGAATCTTCAACATTAGAATTAACTTCATTAGCATTTTCCCCGTTCTCACATTC
CTTGTCAGGGATGATGCCATTTCCTTTTGATTTATCAGAAGCGGATGATGCCATAGGTCGTACT
AATCTCTGATTGTTCTCTCCAGCTGATGCAGGTGGTGCAGCTGATAGGTCCTTCAACTGATCAG
ATACGGATGCTAATAGCTCTGTCCCTGCAACAGCTGAAGTGTCTCCTGTTCTGTTCTCCATCCG
GAGACGCTTGACACCAGCAACTGGAGGTTCTAAAAGGGTGACAGGAGATGGCGGCACCATTTTA
GGAATTTTGTCATTCAATGGATGCTGAAAAAT
Conservation Information
Conserved circRNAs osi_circ_003221*
PMCS 0.327470249
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017