Detail information of EPlOSAG00000028235_circ_ig.1


General Information
CircRNA Name EPlOSAG00000028235_circ_ig.1
ID in PlantcircBase osa_circ_009980
Alias NA
Organism Oryza sativa
Position chr11: 26555305-26555484  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os11g0661400_circ_igg.1 Os11g0661400_circ_igg.2 EPlOSAG00000028235_circ_ig.2 EPlOSAG00000028235_circ_ig.3 EPlOSAG00000028235_circ_ig.4 EPlOSAG00000028235_circ_ig.5 EPlOSAG00000028235_circ_ig.6 EPlOSAG00000028235_circ_ig.7 EPlOSAG00000028235_circ_ig.8 EPlOSAG00000028235_circ_ig.9 EPlOSAG00000028235_circ_ig.10 EPlOSAG00000028235_circ_ig.11 EPlOSAG00000028235_circ_ig.12
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCAATATCATCAAAGGTGACTCCAATGTCATTAGGTGGTATAACATCTGCCAGAAGCCTTTTC
TCAAATTCGTTCTCTGTGACAACATCcttcgttagctgtcctttgcagaacaattcaggccttt
gcagaggaagcatcaccagctccttcaatgtgtcttttacattttccaaggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCGTTAGCTGTCCTTTGCAGAACAATTCAGGCCTTTGCAGAGGAAGCATCACCAGCTCCTTC
AATGTGTCTTTTACATTTTCCAAGGCTCCAATATCATCAAAGGTGACTCCAATGTCATTAGGTG
GTATAACATCTGCCAGAAGCCTTTTCTCAAATTCGTTCTCTGTGACAACATC
Conservation Information
Conserved circRNAs NA
PMCS 0.461260648
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017