Detail information of EPlOSAG00000028235_circ_ig.8


General Information
CircRNA Name EPlOSAG00000028235_circ_ig.8
ID in PlantcircBase osa_circ_009987
Alias Os_ciR562
Organism Oryza sativa
Position chr11: 26556981-26557220  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os11g0661400_circ_igg.1 Os11g0661400_circ_igg.2 EPlOSAG00000028235_circ_ig.1 EPlOSAG00000028235_circ_ig.2 EPlOSAG00000028235_circ_ig.3 EPlOSAG00000028235_circ_ig.4 EPlOSAG00000028235_circ_ig.5 EPlOSAG00000028235_circ_ig.6 EPlOSAG00000028235_circ_ig.7 EPlOSAG00000028235_circ_ig.9 EPlOSAG00000028235_circ_ig.10 EPlOSAG00000028235_circ_ig.11 EPlOSAG00000028235_circ_ig.12
Support reads 61/6
Tissues root/root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCAAATGAAAAAAAAAAGACAAGCTATGCAATGCCACATTGCCATAAACAAGCCCTCATAGAA
CAAATTTGCATAATCTCTGAGATATAATATATGTACttaacaagcgataaatgataaggattaa
aaattaaaacaaagattgcatgcaaacgaacacccaagtgtcaaagagacagaaccaaccaatt
agaactga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 121
Transcript exons: 26556981-26557034,26557154-26557220
TTAACAAGCGATAAATGATAAGGATTAAAAATTAAAACAAAGATTGCATGCAAAGCCACATTGC
CATAAACAAGCCCTCATAGAACAAATTTGCATAATCTCTGAGATATAATATATGTAC

Transcript length: 205
Transcript exons: 26556981-26557099,26557135-26557220
TTAACAAGCGATAAATGATAAGGATTAAAAATTAAAACAAAGATTGCATGCAAACGAACACCCA
AGTGTCAAAGAGACAGAACCAACCAATTAGAACTGAATACCCAATGCCACCAAAGAAAAGACAA
GCTATGCAATGCCACATTGCCATAAACAAGCCCTCATAGAACAAATTTGCATAATCTCTGAGAT
ATAATATATGTAC

Transcript length: 219
Transcript exons: 26556981-26557067,26557089-26557220
TTAACAAGCGATAAATGATAAGGATTAAAAATTAAAACAAAGATTGCATGCAAACGAACACCCA
AGTGTCAAAGAGACAGAACCAACTGCCACCAAAGTTAGTTTTCACAACAGTTCAAATCAAATGA
AAAAAAAAAGACAAGCTATGCAATGCCACATTGCCATAAACAAGCCCTCATAGAACAAATTTGC
ATAATCTCTGAGATATAATATATGTAC

Transcript length: 229
Transcript exons: 26556981-26557164,26557176-26557220
TTAACAAGCGATAAATGATAAGGATTAAAAATTAAAACAAAGATTGCATGCAAACGAACACCCA
AGTGTCAAAGAGACAGAACCAACCAATTAGAACTGAATACCCAATGCCACCAAAGTTAGTTTTC
ACAACAGTTCAAATCAAATGAAAAAAAAAAGACAAGCTATGCAATGCCACATTGCCCTCATAGA
ACAAATTTGCATAATCTCTGAGATATAATATATGTAC

Transcript length: 240
Transcript exons: 26556981-26557220
TTAACAAGCGATAAATGATAAGGATTAAAAATTAAAACAAAGATTGCATGCAAACGAACACCCA
AGTGTCAAAGAGACAGAACCAACCAATTAGAACTGAATACCCAATGCCACCAAAGTTAGTTTTC
ACAACAGTTCAAATCAAATGAAAAAAAAAAGACAAGCTATGCAATGCCACATTGCCATAAACAA
GCCCTCATAGAACAAATTTGCATAATCTCTGAGATATAATATATGTAC

Genomic sequence TTAACAAGCGATAAATGATAAGGATTAAAAATTAAAACAAAGATTGCATGCAAACGAACACCCA
AGTGTCAAAGAGACAGAACCAACCAATTAGAACTGAATACCCAATGCCACCAAAGTTAGTTTTC
ACAACAGTTCAAATCAAATGAAAAAAAAAAGACAAGCTATGCAATGCCACATTGCCATAAACAA
GCCCTCATAGAACAAATTTGCATAATCTCTGAGATATAATATATGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.426118264
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017