Detail information of EPlOSAG00000028235_circ_ig.9


General Information
CircRNA Name EPlOSAG00000028235_circ_ig.9
ID in PlantcircBase osa_circ_009988
Alias NA
Organism Oryza sativa
Position chr11: 26558940-26561324  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os11g0661400_circ_igg.1 Os11g0661400_circ_igg.2 EPlOSAG00000028235_circ_ig.1 EPlOSAG00000028235_circ_ig.2 EPlOSAG00000028235_circ_ig.3 EPlOSAG00000028235_circ_ig.4 EPlOSAG00000028235_circ_ig.5 EPlOSAG00000028235_circ_ig.6 EPlOSAG00000028235_circ_ig.7 EPlOSAG00000028235_circ_ig.8 EPlOSAG00000028235_circ_ig.10 EPlOSAG00000028235_circ_ig.11 EPlOSAG00000028235_circ_ig.12
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCAAAGAATTTTGCTAACAGGTTGGTCTTTCAGCCACAAATTACAGCTTTTATTCTGACCAAC
AGAAAACTGAGGAACACTGATAGGAAGGTGAGGACTctttgcgacaatgacgattgctgagctg
gacccacatatcttaccctatcccctacaatggcagtgcagtcatgttcgggtaagtatagcat
agttgaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTGCGACAATGACGATTGCTGAGCTGGACCCACATATCTTACCCTATCCCCTACAATGGCAG
TGCAGTCATGTTCGGGTAAGTATAGCATAGTTGAAAATGATCTATCGATAAACAAGAGATAATA
TCATAGTAGAAAACCTTCTCTAAAAGTATAGCTCTTGGATGTAGCTGTTGATGATTCCTGTTTG
GGCAAAGATGCAGAATGCAGAGTCGATGTACCCACGATATCAGCATGCACACTAGAAGGTTGTA
CAGCTGGCCTCCTGAAGTGCATAGCGTCTGCCAAGGAAGAGCGGTTCTTATGAAGAATTGCCAA
CTTCTCACTACCAGCCTTATCCCCTGACTTATCAGACTTCGCAGCATCTTTCTGCGACTCTGGG
TCCTTTGAAGGCGCCTAAAGAGAATTTTGCTCTCAATAATAATAATTGACACCAAGTAGTTTTA
AGCACAAGTTACATGGATAACTTACCCCAGGCAACAAAAGCGAATCAACAACAAGTAGCCTAGC
ACCGAAATGTTTTGCAAGTGCCTTTATCAATGTTTCCTGATAAATCTCCGAACCTGATGCATGT
TTGCATTAGAAAAATCAGATGCCTACAAGAATCAGCAAAAAAGGATGCACACAGCCTTACCTTC
AAGGACCTCAATTTAACTCCGAAGACAATAAATATGCAATGAGATCATAAAAGGTACCTGCTGG
ACCAGATAATAGAATCCGTTGGTTTATTGATGAAATTTCTGAGAATTGTTTGATGAATTCCTTC
TTTTCCAAGTGTATGAATGCACATGATAAGAGCACATTCTTTGTGTTATCGCTGCATGAAATGG
AGTTGATGAACAACACATGAATACAAGAACACAAACATGTGAGAGAACAGATATCATGCTACAA
TTAAAGTTACGTCAGTGGAAGTCTGTAAGAATATGAACATGTGAGAGAGCAATGAATATCATGC
TACATTTAAACTACTTTATCAACCGTGTTGTGCCTATTATCTAATGAATGCTATATTGGTATGA
ACTAATCATACAGAATATAGCGAATTAAGAATAACTAATGAATGCTATTTTAGTTTTTTTTTAA
CAATGTAACATCGCAGATATGAAGCATATTAAGAACACAAAATAAACAGAATAAAAGTTAAAGA
ATATAGGAAGGAAGATTAACCCAAAGTATATTACCTGAGGTAATAAGGAAAATTTTCAAATGTA
ACATCAATATCATTTGGACTAATAATTCCTTGTTTCATCCCATCCTTAAAGGCTTGGCATCTGC
TTGGAGGTAAACTGGCTGAAGAGTTAAGATGCCTGATGAGATCCCTCTGATCTTCAAGAGCTTT
AAAAAGATCACCAGTCAAATCGAACTCTGATATAGTTGTTCCTGCAATCATCCTCAGAACTGGC
CTTATCTTATAAGTTGCAATCTTACCGATTTCAGCACCAAGATGAGCATCAGATCCAAAGCCAT
TGTGTTGACTGATGTCGTTCGGGACAGCATCAGGAGATACTACGGGGGCTGCAGCCACATCTAA
TGGAGAATCTTCAACATTAGAATTAACTTCATTAGCATTTTCCCCGTTCTCACATTCCTTGTCA
GGGATGATGCCATTTCCTTTTGATTTATCAGAAGCGGATGATGCCATAGGTCGTACTAATCTCT
GATTGTTCTCTCCAGCTGATGCAGGTGGTGCAGCTGATAGGTCCTTCAACTGATCAGATACGGA
TGCTAATAGCTCTGTCCCTGCAACAGCTGAAGTGTCTCCTGTTCTGTTCTCCATCCGGAGACGC
TTGACACCAGCAACTGGAGGTTCTAAAAGGGTGACAGGAGATGGCGGCACCATTTTAGGAATTT
TGTCATTCAATGGATGCTGAAAAATCTGTAGGAAGGTGAAGGAAAGCAGAAGGTAAAACAAAAA
TATAGATAGAGCTATTTCCAGACTGTGCACATCTAAACTAATAAAGAAAGGAAAATTGATGAAA
GGAACTGTATGATTGCATGAATAAAGAAGAAGATTAGGATACGTAGGCATGCTTGCCGCATGGA
CTGAAAACAACTTCATCCCCTCCTTTAAGGGGAACTTTTGTGCCAGCAGTTATGGACCTTCCGT
TTAATTGGACCGTACCCTTCTTGCCTAGAACTTCTAGCTCACATGTACCTTGCTGAAAGAACAT
AAAAAATCAACAAAACATTATAAGCAAGTGCTGCCAATTTTGCTGCACATTGCACAAAGAAAAA
GGGCACCAGAGAAAAAAAAAAGACATGCCTCGAGTTGCCGCAACCTGCAAAGAATTTTGCTAAC
AGGTTGGTCTTTCAGCCACAAATTACAGCTTTTATTCTGACCAACAGAAAACTGAGGAACACTG
ATAGGAAGGTGAGGACT
Conservation Information
Conserved circRNAs NA
PMCS 0.156412827
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017